Co-expression analysis

Gene ID TaAffx.86386.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g23660: transport protein, putative (HF=5e-6)
Module size 7 genes
NF 0.01
%ile 2.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8694.10.67TaAffx.86386.1.S1_atCA609728--5e-6At3g23660transport protein, putativeO.I.H.G.S.X.
0.1415.80.82TaAffx.53323.1.S1_atCA693606--2e-1At3g16175thioesterase family proteinO.I.H.G.S.X.
0.078.60.87Ta.25810.1.A1_atCD374040--1e+0At5g10310unknown proteinO.I.H.G.S.X.
0.067.60.87TaAffx.72471.1.S1_atCA725188--1e+0At2g27940zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.045.80.85TaAffx.59511.2.S1_atCA682522--1e-3At1g66890-O.I.H.G.S.X.
0.012.40.87Ta.3074.2.S1_x_atCA646915--1e-3At2g40290eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putativeO.I.H.G.S.X.
-0.70.78Ta.28757.2.S1_atBQ609665--1e+0At1g80940unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.397.6GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.697.0GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.396.7GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.795.8GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.795.8GSM138162genotype E5 developing seed at 5 days after anthesis, biological rep1GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
3.595.4GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.495.2GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.294.8GSM298084Crown tissue of Solstice at 3 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.294.8GSM250914Tc_7dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.194.5GSM250897TcLr1_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g23660, orthologous to the query gene, TaAffx.86386.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
1.00100.0At3g23660821946transport protein, putativeF:protein binding, transporter activity, zinc ion binding;P:intracellular protein transport, transport, ER to Golgi vesicle-mediated transport;C:COPII vesicle coat;MFOPO.I.H.G.S.X.
0.5267.4At3g04080819563ATAPY1 (APYRASE 1)Encodes an enzyme with ATPase and ADPase activity (an apyrase) that when mutated in combination with ATAPY2 causes a complete inhibition of pollen germination.O.I.H.G.S.X.
0.3541.6At5g35730833549EXS family protein / ERD1/XPR1/SYG1 family proteinF:molecular_function unknown;P:biological_process unknown;C:integral to membrane;MFPOO.I.H.G.S.X.
0.3338.1At1g34020840299transporter-relatedF:unknown;P:unknown;C:plasma membrane, membrane;PMFOBO.I.H.G.S.X.
0.3133.8At4g34450829596coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putativeF:protein binding, clathrin binding, structural molecule activity, binding;P:intracellular protein transport, vesicle-mediated transport;C:chloroplast, membrane;MFOPBO.I.H.G.S.X.
0.2930.3At3g05420819707ACBP4 (ACYL-COA BINDING PROTEIN 4)Acyl-CoA binding protein with high affinity for oleoyl-CoA. Expressed in all plant organs. Involved in fatty acid transport.O.I.H.G.S.X.
0.2319.3At4g24840828587-F:molecular_function unknown;P:protein transport, Golgi organization;C:vacuole;MFOPO.I.H.G.S.X.
0.2319.3At5g36290833627unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;BMOPFAO.I.H.G.S.X.
0.1710.2At4g24330828536unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;MFOPBO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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