CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID TaAffx.86386.1.S1_at

Gene name
Homology with Arabidopsis Similar to At3g23660: transport protein, putative (HF=5e-6)

Module size 7 genes

NF 0.01

%ile 2.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.86 94.1 0.67 TaAffx.86386.1.S1_at CA609728 - - 5e-6 At3g23660 transport protein, putative O.I. H.G. S.X.
0.14 15.8 0.82 TaAffx.53323.1.S1_at CA693606 - - 2e-1 At3g16175 thioesterase family protein O.I. H.G. S.X.
0.07 8.6 0.87 Ta.25810.1.A1_at CD374040 - - 1e+0 At5g10310 unknown protein O.I. H.G. S.X.
0.06 7.6 0.87 TaAffx.72471.1.S1_at CA725188 - - 1e+0 At2g27940 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.04 5.8 0.85 TaAffx.59511.2.S1_at CA682522 - - 1e-3 At1g66890 - O.I. H.G. S.X.
0.01 2.4 0.87 Ta.3074.2.S1_x_at CA646915 - - 1e-3 At2g40290 eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putative O.I. H.G. S.X.
- 0.7 0.78 Ta.28757.2.S1_at BQ609665 - - 1e+0 At1g80940 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.3 97.6 GSM250895 Tc_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.6 97.0 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
4.3 96.7 GSM298067 Leaf tissue of Paragon at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
3.7 95.8 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.7 95.8 GSM138162 genotype E5 developing seed at 5 days after anthesis, biological rep1 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.5 95.4 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.4 95.2 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
3.2 94.8 GSM298084 Crown tissue of Solstice at 3 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
3.2 94.8 GSM250914 Tc_7dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.1 94.5 GSM250897 TcLr1_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g23660, orthologous to the query gene, TaAffx.86386.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
1.00 100.0 At3g23660 821946 transport protein, putative F:protein binding, transporter activity, zinc ion binding;P:intracellular protein transport, transport, ER to Golgi vesicle-mediated transport;C:COPII vesicle coat;MFOP O.I. H.G. S.X.
0.52 67.4 At3g04080 819563 ATAPY1 (APYRASE 1) Encodes an enzyme with ATPase and ADPase activity (an apyrase) that when mutated in combination with ATAPY2 causes a complete inhibition of pollen germination. O.I. H.G. S.X.
0.35 41.6 At5g35730 833549 EXS family protein / ERD1/XPR1/SYG1 family protein F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;MFPO O.I. H.G. S.X.
0.33 38.1 At1g34020 840299 transporter-related F:unknown;P:unknown;C:plasma membrane, membrane;PMFOB O.I. H.G. S.X.
0.31 33.8 At4g34450 829596 coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative F:protein binding, clathrin binding, structural molecule activity, binding;P:intracellular protein transport, vesicle-mediated transport;C:chloroplast, membrane;MFOPB O.I. H.G. S.X.
0.29 30.3 At3g05420 819707 ACBP4 (ACYL-COA BINDING PROTEIN 4) Acyl-CoA binding protein with high affinity for oleoyl-CoA. Expressed in all plant organs. Involved in fatty acid transport. O.I. H.G. S.X.
0.23 19.3 At4g24840 828587 - F:molecular_function unknown;P:protein transport, Golgi organization;C:vacuole;MFOP O.I. H.G. S.X.
0.23 19.3 At5g36290 833627 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;BMOPFA O.I. H.G. S.X.
0.17 10.2 At4g24330 828536 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;MFOPB O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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