Co-expression analysis

Gene ID	TaAffx.86185.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g04778: unknown protein (HF=6e-2)
Module size	12 genes
NF	0.44
%ile	69.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.69	86.9	0.82	TaAffx.86185.1.S1_at	CA614998	-	-	6e-2	At1g04778	unknown protein	O.I.	H.G.	S.X.	Please select
0.56	78.6	0.89	TaAffx.9327.1.S1_at	CA602483	-	-	1e+0	At5g16090	-	O.I.	H.G.	S.X.	Please select
0.56	78.6	0.91	TaAffx.84085.1.S1_at	CA645173	-	-	4e+0	At1g31250	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.55	76.8	0.87	TaAffx.56345.1.S1_at	CA653725	-	-	1e+0	At3g01440	oxygen evolving enhancer 3 (PsbQ) family protein	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.88	Ta.16803.1.S1_at	CA612951	-	-	3e-1	At2g25760	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.91	Ta.18965.2.S1_at	CA608704	-	-	7e-2	At1g22480	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.42	60.9	0.88	Ta.18959.1.S1_at	CA644818	-	-	2e-1	At5g59845	gibberellin-regulated family protein	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.87	TaAffx.111336.1.S1_at	CA643021	-	-	7e-2	At4g17240	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.89	Ta.26186.1.A1_at	CD452604	-	-	2e+0	Atmg01350	-	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.90	TaAffx.56735.1.S1_at	CA645491	-	-	4e+0	At5g05370	ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.87	TaAffx.59091.1.S1_at	CA608205	-	-	2e+1	At5g19910	SOH1 family protein	O.I.	H.G.	S.X.	Please select
0.15	17.1	0.85	Ta.26188.1.A1_at	CD452630	-	-	6e-1	At3g02720	DJ-1 family protein / protease-related	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
18.7	99.7	GSM314256	tissue type: germinating seed, root - rep3	GSE12508	Transcription patterns during wheat development
13.2	99.5	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
13.1	99.4	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
12.7	99.4	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
11.9	99.4	GSM314255	tissue type: germinating seed, root - rep2	GSE12508	Transcription patterns during wheat development
10.8	99.2	GSM314254	tissue type: germinating seed, root - rep1	GSE12508	Transcription patterns during wheat development
7.7	98.7	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
7.2	98.5	GSM314280	tissue type: anthers, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
7.2	98.5	GSM314278	tissue type: anthers, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
5.8	97.9	GSM314279	tissue type: anthers, before anthesis - rep2	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage