Co-expression analysis

Gene ID	TaAffx.86181.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g59330: anthocyanin-related membrane protein family (HF=3e+0)
Module size	34 genes
NF	0.38
%ile	60.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.94	98.9	0.96	TaAffx.86181.1.S1_at	CA615052	-	-	3e+0	At3g59330	anthocyanin-related membrane protein family	O.I.	H.G.	S.X.	Please select
0.55	76.8	0.98	Ta.7503.1.S1_at	BJ296010	-	-	5e-2	At2g16015	unknown protein	O.I.	H.G.	S.X.	Please select
0.52	73.7	0.96	Ta.6999.1.A1_at	BJ309757	-	-	2e+0	At1g16880	uridylyltransferase-related	O.I.	H.G.	S.X.	Please select
0.51	73.0	0.97	Ta.25628.1.S1_x_at	CA638117	-	-	5e-5	At5g61770	PPAN (PETER PAN-LIKE PROTEIN)	O.I.	H.G.	S.X.	Please select
0.49	69.7	0.97	Ta.3396.1.A1_at	BJ211165	-	-	1e+1	At5g43430	ETFBETA	O.I.	H.G.	S.X.	Please select
0.48	69.0	0.96	TaAffx.128755.1.S1_at	BQ743665	-	-	2e+0	At2g47690	NADH-ubiquinone oxidoreductase-related	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.97	Ta.19090.1.S1_at	CA647059	-	-	1e+1	At5g42965	nucleic acid binding / ribonuclease H	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.97	Ta.28393.2.S1_x_at	CK195651	-	-	2e-27	At3g20050	ATTCP-1	O.I.	H.G.	S.X.	Please select
0.45	65.2	0.97	TaAffx.15928.1.A1_at	BG904657	-	-	1e+1	At5g50790	nodulin MtN3 family protein	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.97	TaAffx.39377.1.A1_at	BG907838	-	-	7e+0	At5g50480	NF-YC6 (NUCLEAR FACTOR Y, SUBUNIT C6)	O.I.	H.G.	S.X.	Please select
0.41	59.6	0.96	Ta.687.1.S1_at	BJ249475	-	-	3e-12	At5g39900	GTP binding / GTPase/ translation elongation factor	O.I.	H.G.	S.X.	Please select
0.41	59.6	0.96	Ta.30368.1.A1_at	CK205657	-	-	3e-1	At5g59000	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.97	Ta.28475.1.A1_at	CA722655	-	-	4e+0	At2g03290	protein transmembrane transporter	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.97	Ta.9787.1.S1_a_at	CK171633	-	-	6e-65	At1g80410	EMB2753 (EMBRYO DEFECTIVE 2753)	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.97	Ta.14546.1.S1_x_at	CK157902	-	-	3e+0	At5g55610	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.96	Ta.7508.1.S1_at	BF484771	-	-	3e-3	At2g40660	tRNA-binding region domain-containing protein	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.97	Ta.12283.1.A1_at	CD868445	-	-	7e+0	At5g60890	MYB34 (MYB DOMAIN PROTEIN 34)	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.98	Ta.6563.1.A1_x_at	BJ263201	-	-	3e-8	At2g06990	HEN2 (hua enhancer 2)	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.97	Ta.9787.2.S1_a_at	CA694380	-	-	1e+0	At1g18290	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.96	Ta.3096.1.S1_at	CA746014	-	-	3e+0	At3g46230	ATHSP17.4	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.97	TaAffx.34687.1.S1_at	BJ307946	-	-	4e-6	At3g16840	ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.96	Ta.6498.1.A1_at	BJ228594	-	-	1e+0	At3g45285	-	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.97	Ta.20442.2.S1_at	BJ228354	-	-	4e-1	At2g40360	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.97	Ta.3128.2.A1_a_at	BJ231772	-	-	1e+0	At5g19800	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.96	TaAffx.4182.1.S1_at	BJ230530	-	-	4e+0	At5g59990	-	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.97	Ta.8993.1.S1_at	BJ216499	-	-	7e+0	At5g27889	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	39.2	0.98	Ta.28393.1.S1_x_at	BG607691	-	-	1e-37	At3g20050	ATTCP-1	O.I.	H.G.	S.X.	Please select
0.28	39.2	0.97	Ta.20442.1.A1_at	BJ231438	-	-	1e-10	At2g40360	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.96	Ta.16166.1.S1_at	CA601819	-	-	6e-1	At5g20120	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.97	Ta.7092.1.A1_a_at	CD492186	-	-	2e-10	At5g15810	N2,N2-dimethylguanosine tRNA methyltransferase family protein	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.97	Ta.7343.1.S1_at	CD939192	-	-	7e-1	At2g19680	mitochondrial ATP synthase g subunit family protein	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.97	Ta.4239.1.A1_at	CD914880	-	-	2e+0	At5g53120	SPDS3 (SPERMIDINE SYNTHASE 3)	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.98	Ta.23800.1.S1_at	CA647644	-	-	3e-4	At1g05910	cell division cycle protein 48-related / CDC48-related	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.97	Ta.7537.1.S1_at	CK199057	-	-	7e-5	At2g16940	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.0	97.4	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.2	96.6	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
4.0	96.3	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
3.0	94.3	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
2.8	93.6	GSM314253	tissue type: germinating seed, coleoptile - rep3	GSE12508	Transcription patterns during wheat development
2.6	92.9	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
2.6	92.9	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
2.5	92.5	GSM139914	Anther pre-meiosis rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.4	92.0	GSM314254	tissue type: germinating seed, root - rep1	GSE12508	Transcription patterns during wheat development
2.4	92.0	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage