Co-expression analysis

Gene ID TaAffx.86177.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g20530: protein kinase family protein (HF=7e-2)
Module size 13 genes
NF 0.34
%ile 54.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4767.90.80TaAffx.86177.1.S1_atCA615245--7e-2At3g20530protein kinase family proteinO.I.H.G.S.X.
0.6182.00.88TaAffx.112817.1.S1_atCA620646--1e+0At5g59480haloacid dehalogenase-like hydrolase family proteinO.I.H.G.S.X.
0.5374.90.87TaAffx.83096.1.S1_x_atCA662119--1e+0At5g44210ERF9 (ERF DOMAIN PROTEIN 9)O.I.H.G.S.X.
0.4464.50.92TaAffx.12644.1.S1_atBJ247681--4e-1At1g18800NRP2 (NAP1-RELATED PROTEIN 2)O.I.H.G.S.X.
0.4260.90.88TaAffx.24194.1.S1_atCA723847--1e+1At4g13955-O.I.H.G.S.X.
0.3854.70.89Ta.9748.3.S1_atCA608945--1e+0At1g55928unknown proteinO.I.H.G.S.X.
0.3651.90.89TaAffx.1270.2.S1_atCA622366--2e+0At2g16200protein binding / structural moleculeO.I.H.G.S.X.
0.3346.90.91Ta.17218.1.S1_atCA618872--2e+1At5g08260scpl35 (serine carboxypeptidase-like 35)O.I.H.G.S.X.
0.2735.60.88TaAffx.25597.1.S1_atCA697956--1e+0At4g29740CKX4 (CYTOKININ OXIDASE 4)O.I.H.G.S.X.
0.2532.10.92TaAffx.81141.1.S1_atCA689176--1e+0At3g52760integral membrane Yip1 family proteinO.I.H.G.S.X.
0.2227.10.88TaAffx.12644.1.S1_x_atBJ247681--4e-1At1g18800NRP2 (NAP1-RELATED PROTEIN 2)O.I.H.G.S.X.
0.1517.10.87TaAffx.82388.1.S1_atCA672817--8e-1At3g22260OTU-like cysteine protease family proteinO.I.H.G.S.X.
0.1517.10.86TaAffx.112643.1.S1_atCA622262--4e+0At1g69485structural constituent of ribosomeO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
28.899.8GSM315203target strand labeled: Antisense - rep1GSE12528Wheat "Chinese Spring" natural antisense transcription surveyLink to GEO
13.199.4GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
12.799.4GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
11.499.3GSM111233genotype H8 developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
11.099.3GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.197.5GSM298090Leaf tissue of Solstice at 5 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.196.4GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.695.6GSM298072Crown tissue of Paragon at 3 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.294.8GSM324488Si- B+ rep2GSE12936Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildewLink to GEO
3.294.8GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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