CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID TaAffx.85941.1.S1_at

Gene name
Homology with Arabidopsis Similar to At5g23760: heavy-metal-associated domain-containing protein (HF=2e+1)

Module size 6 genes

NF 0.54

%ile 80.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.2 0.96 TaAffx.85941.1.S1_at CA618291 - - 2e+1 At5g23760 heavy-metal-associated domain-containing protein O.I. H.G. S.X.
0.63 83.1 0.95 TaAffx.109175.2.S1_x_at CA679138 - - 1e+0 At4g29020 glycine-rich protein O.I. H.G. S.X.
0.60 81.0 0.96 Ta.18019.2.S1_at CA625748 - - 1e+0 At1g32700 zinc-binding family protein O.I. H.G. S.X.
0.50 72.4 0.96 TaAffx.110167.1.S1_at CA662870 - - 4e+0 At4g14440 HCD1 (3-HYDROXYACYL-COA DEHYDRATASE 1) O.I. H.G. S.X.
0.31 42.7 0.96 Ta.6759.2.S1_at BJ211299 - - 2e+0 At5g63310 NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2) O.I. H.G. S.X.
0.22 27.1 0.96 Ta.3911.2.S1_s_at CA604151 - - 4e+0 At2g44290 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (YLS3) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
16.7 99.6 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
9.6 99.1 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
7.3 98.6 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.8 98.4 GSM298067 Leaf tissue of Paragon at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
6.3 98.2 GSM298091 Leaf tissue of Solstice at 9 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
6.0 98.0 GSM298090 Leaf tissue of Solstice at 5 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
5.2 97.5 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.2 97.5 GSM250895 Tc_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.0 97.4 GSM298079 Leaf tissue of Solstice at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
4.6 97.0 GSM250897 TcLr1_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.223065.1.S1_x_at, orthologous to the query gene, TaAffx.85941.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 78.6 PtpAffx.223065.1.S1_x_at At5g23760 hypothetical protein - 1e-17 At5g53540 MSP1 protein, putative / intramitochondrial sorting protein, putative O.I. H.G. S.X.
0.20 34.6 PtpAffx.5642.1.A1_at At5g23760 - - 6e+0 At5g39024 unknown protein O.I. H.G. S.X.
0.17 29.1 PtpAffx.121327.1.A1_at At5g23760 - - 6e+0 At5g35475 - O.I. H.G. S.X.
0.15 25.3 PtpAffx.206546.1.S1_at At5g23760 hypothetical protein - 1e-15 At2g23890 5' nucleotidase family protein O.I. H.G. S.X.
0.13 21.6 PtpAffx.207745.1.S1_at At5g23760 hypothetical protein - 3e-9 At5g05770 WOX7 (WUSCHEL-RELATED HOMEOBOX 7) O.I. H.G. S.X.
0.11 18.1 PtpAffx.204439.1.S1_at At5g23760 condensin complex components subunit - 7e-6 At2g27170 TTN7 (TITAN7) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Vitis_vinifera
Zea_mays

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