Co-expression analysis

Gene ID	TaAffx.85824.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g09890: ankyrin repeat family protein (HF=3e+0)
Module size	25 genes
NF	0.49
%ile	74.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	92.2	0.74	TaAffx.85824.1.S1_at	CA619285	-	-	3e+0	At3g09890	ankyrin repeat family protein	O.I.	H.G.	S.X.	Please select
0.61	82.0	0.83	TaAffx.54175.1.S1_at	CA684847	-	-	4e+0	At4g14630	GLP9 (GERMIN-LIKE PROTEIN 9)	O.I.	H.G.	S.X.	Please select
0.60	81.0	0.83	TaAffx.31501.1.S1_at	CA614715	-	-	4e+0	At4g15715	-	O.I.	H.G.	S.X.	Please select
0.58	79.2	0.79	Ta.25005.1.A1_x_at	CB412245	-	-	1e+0	At3g22190	IQD5 (IQ-domain 5)	O.I.	H.G.	S.X.	Please select
0.57	79.2	0.80	TaAffx.59361.1.S1_at	CA602197	-	-	1e+0	At2g23990	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.57	79.2	0.80	TaAffx.32098.1.S1_at	CA600929	-	-	9e-1	At3g22160	VQ motif-containing protein	O.I.	H.G.	S.X.	Please select
0.56	78.6	0.81	TaAffx.79837.1.S1_at	CA707735	-	-	2e+0	At4g30580	ATS2	O.I.	H.G.	S.X.	Please select
0.56	78.6	0.83	TaAffx.56833.1.S1_at	CA642992	-	-	4e+0	At5g43750	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	76.8	0.79	TaAffx.108993.1.S1_at	CA681464	-	-	4e+0	At1g58420	-	O.I.	H.G.	S.X.	Please select
0.54	75.5	0.81	TaAffx.25951.1.S1_at	CA693909	-	-	4e+0	At3g03930	protein kinase-related	O.I.	H.G.	S.X.	Please select
0.52	73.7	0.84	TaAffx.8047.1.S1_at	CA638257	-	-	3e-1	At1g70270	ATP binding / DNA binding	O.I.	H.G.	S.X.	Please select
0.51	73.0	0.85	TaAffx.109350.1.S1_at	CA676688	-	-	6e-2	At4g14695	unknown protein	O.I.	H.G.	S.X.	Please select
0.51	73.0	0.82	TaAffx.7031.1.S1_at	CA680305	-	-	3e-1	At5g64040	PSAN	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.81	TaAffx.22.1.A1_at	AJ615849	-	-	9e-1	At1g65210	-	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.82	TaAffx.84870.1.S1_at	AJ613575	-	-	2e-2	At1g11240	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.87	TaAffx.56944.1.S1_at	CA639703	-	-	4e+0	At5g64920	CIP8 (COP1-INTERACTING PROTEIN 8)	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.81	TaAffx.52994.1.S1_at	CA697967	-	-	4e+0	At5g28360	ACS3 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE LIKE PSEUDOGENE)	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.79	TaAffx.25579.1.S1_at	CA698168	-	-	9e-1	At5g10070	RNase L inhibitor protein-related	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.80	TaAffx.9349.1.S1_at	CA601318	-	-	4e+0	At4g16165	Expressed protein	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.80	TaAffx.6094.1.S1_at	CA691569	-	-	4e+0	At3g17240	mtLPD2 (LIPOAMIDE DEHYDROGENASE 2)	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.85	TaAffx.58444.1.S1_at	CA619595	-	-	4e+0	At5g07850	transferase family protein	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.77	TaAffx.56355.1.S1_at	CA653580	-	-	4e+0	At4g10970	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.81	TaAffx.111885.1.S1_at	CA631180	-	-	4e+0	At3g16780	60S ribosomal protein L19 (RPL19B)	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.82	TaAffx.107856.1.S1_at	CA694359	-	-	4e+0	At5g52605	-	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.79	TaAffx.85688.1.S1_at	CA620527	-	-	1e+0	At4g37095	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.0	99.3	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
10.3	99.2	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
7.7	98.7	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
6.4	98.2	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
5.1	97.5	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.2	96.6	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.1	96.4	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
4.0	96.3	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
4.0	96.3	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.8	96.0	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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