Co-expression analysis

Gene ID	TaAffx.85758.2.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g22450: COX6B (CYTOCHROME C OXIDASE 6B) (HF=1e-15)
Module size	22 genes
NF	0.03
%ile	9.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.98	99.9	0.62	TaAffx.85758.2.S1_at	CA625550	-	-	1e-15	At1g22450	COX6B (CYTOCHROME C OXIDASE 6B)	O.I.	H.G.	S.X.	Please select
0.24	30.3	0.98	Ta.2592.2.S1_s_at	CD874103	-	-	6e+0	At4g19270	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.98	Ta.28783.1.S1_x_at	U32310.1	single-stranded nucleic acid binding protein	-	5e-4	At4g39260	GR-RBP8	O.I.	H.G.	S.X.	Please select
0.19	22.4	0.93	Ta.6335.1.S1_at	AJ612925	-	-	3e+0	At3g59680	unknown protein	O.I.	H.G.	S.X.	Please select
0.16	18.2	0.98	Ta.1078.2.S1_a_at	BJ252383	Cyclophilin	-	8e-6	At4g38740	ROC1 (ROTAMASE CYP 1)	O.I.	H.G.	S.X.	Please select
0.14	15.8	0.98	Ta.28350.1.S1_a_at	CK171662	14-3-3 protein	-	3e-28	At3g02520	GRF7 (GENERAL REGULATORY FACTOR 7)	O.I.	H.G.	S.X.	Please select
0.12	13.3	0.98	Ta.659.4.S1_a_at	CD878208	-	-	0	At1g07920	elongation factor 1-alpha / EF-1-alpha	O.I.	H.G.	S.X.	Please select
0.11	12.4	0.92	TaAffx.12787.1.S1_at	BJ234282	-	-	4e+0	At3g16670	unknown protein	O.I.	H.G.	S.X.	Please select
0.10	11.3	0.94	TaAffx.51434.1.S1_at	CA725005	-	-	1e+1	At5g28919	-	O.I.	H.G.	S.X.	Please select
0.10	11.3	0.94	Ta.25306.1.S1_at	CK153489	-	-	2e-1	At5g47210	nuclear RNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.08	9.4	0.75	TaAffx.85913.1.S1_at	CA618462	-	-	1e+0	At1g08880	H2AXA	O.I.	H.G.	S.X.	Please select
0.08	9.4	0.92	TaAffx.86057.1.S1_at	CA617169	-	-	7e-2	At4g29480	mitochondrial ATP synthase g subunit family protein	O.I.	H.G.	S.X.	Please select
0.07	8.6	0.95	Ta.9084.3.S1_at	CA666296	-	-	1e+1	At5g50050	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select
0.06	7.6	0.93	Ta.15782.1.S1_at	CA486876	-	-	8e-1	At5g56190	WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.06	7.6	0.94	Ta.9784.3.S1_x_at	CA604451	-	-	4e+0	At2g22630	AGL17 (agamous-like 17)	O.I.	H.G.	S.X.	Please select
0.06	7.6	0.93	TaAffx.5030.1.S1_at	CA724818	-	-	3e+0	At5g14105	unknown protein	O.I.	H.G.	S.X.	Please select
0.04	5.8	0.85	TaAffx.51864.1.S1_at	CA717465	-	-	4e+0	At2g39410	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.	Please select
0.04	5.8	0.91	TaAffx.113241.1.S1_at	CA617006	-	-	1e+1	At4g30370	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.04	5.8	0.92	Ta.6231.3.S1_x_at	CA694238	-	-	7e-5	At5g02270	ATNAP9	O.I.	H.G.	S.X.	Please select
0.01	2.4	0.92	TaAffx.92487.1.A1_at	BJ263396	-	-	8e-1	At5g07475	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.01	2.4	0.91	TaAffx.119239.1.S1_at	BJ281538	-	-	3e-7	At2g39480	PGP6 (P-GLYCOPROTEIN 6)	O.I.	H.G.	S.X.	Please select
0.01	2.4	0.93	Ta.2643.2.S1_x_at	CA683105	-	-	1e-3	At1g71790	F-actin capping protein beta subunit family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.0	98.0	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
5.8	97.9	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.6	97.8	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.4	96.8	GSM298069	Leaf tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.2	96.6	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.1	96.4	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.0	96.3	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.4	95.2	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.3	95.0	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.2	94.8	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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