Co-expression analysis

Gene ID	TaAffx.8564.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g02220: unknown protein (HF=4e+0)
Module size	10 genes
NF	0.19
%ile	33.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.90	94.8	0.90	TaAffx.8564.1.S1_at	CA623409	-	-	4e+0	At5g02220	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.94	TaAffx.29371.1.S1_at	CA644147	-	-	4e+0	At5g18310	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.93	TaAffx.77776.1.S1_at	CA743024	-	-	2e+0	At3g07590	small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative	O.I.	H.G.	S.X.	Please select
0.28	39.2	0.93	Ta.26942.1.S1_at	CD491274	-	-	8e-46	At5g59300	UBC7 (UBIQUITIN CARRIER PROTEIN 7)	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.94	TaAffx.51397.1.S1_at	CA725473	-	-	4e-49	At1g23490	ATARF1 (ADP-RIBOSYLATION FACTOR 1)	O.I.	H.G.	S.X.	Please select
0.14	15.8	0.96	TaAffx.55653.1.S1_at	CA663094	-	-	1e+1	At4g20030	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.14	15.8	0.91	TaAffx.85023.1.S1_at	CA626261	-	-	4e+0	At4g24740	AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 2)	O.I.	H.G.	S.X.	Please select
0.13	14.6	0.94	TaAffx.65462.1.S1_at	BJ245082	-	-	9e-1	At3g18300	unknown protein	O.I.	H.G.	S.X.	Please select
0.13	14.6	0.94	TaAffx.25411.1.S1_at	CA700489	-	-	4e+0	At4g35320	unknown protein	O.I.	H.G.	S.X.	Please select
0.07	8.6	0.94	TaAffx.5596.1.S1_at	CA705635	-	-	3e+0	At1g12250	thylakoid lumenal protein-related	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.4	99.2	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
9.6	99.1	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.7	98.7	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
7.5	98.6	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.1	98.1	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.0	98.0	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.6	97.8	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
5.4	97.7	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.8	96.0	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.6	95.6	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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