Co-expression analysis

Gene ID	TaAffx.85507.1.S1_s_at
Gene name
Homology with Arabidopsis	Similar to At1g78300: GRF2 (GENERAL REGULATORY FACTOR 2) (HF=3e+0)
Module size	37 genes
NF	0.38
%ile	60.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.92	98.5	0.92	TaAffx.85507.1.S1_s_at	CA622147	-	-	3e+0	At1g78300	GRF2 (GENERAL REGULATORY FACTOR 2)	O.I.	H.G.	S.X.	Please select
0.57	79.2	0.93	Ta.17343.1.S1_at	CA619861	-	-	1e+1	At5g67510	60S ribosomal protein L26 (RPL26B)	O.I.	H.G.	S.X.	Please select
0.49	69.7	0.93	TaAffx.129082.2.S1_at	CA610797	-	-	4e-3	At1g58280	-	O.I.	H.G.	S.X.	Please select
0.49	69.7	0.93	TaAffx.49612.2.A1_at	CA498714	-	-	5e-1	At1g06980	unknown protein	O.I.	H.G.	S.X.	Please select
0.49	69.7	0.94	TaAffx.58227.1.S1_at	CA621342	-	-	1e+0	At5g52160	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.93	TaAffx.78717.1.S1_at	CA728365	-	-	3e+0	At2g24570	WRKY17	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.94	TaAffx.29732.1.S1_at	CA636473	-	-	7e-1	At4g14550	IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14)	O.I.	H.G.	S.X.	Please select
0.45	65.2	0.93	Ta.14146.3.S1_x_at	CA697368	-	-	2e+1	At5g24313	unknown protein	O.I.	H.G.	S.X.	Please select
0.45	65.2	0.93	TaAffx.81752.1.S1_at	CA682283	-	-	4e+0	At3g06600	unknown protein	O.I.	H.G.	S.X.	Please select
0.45	65.2	0.94	TaAffx.30598.1.S1_at	CA623743	-	-	1e+0	At3g05230	signal peptidase subunit family protein	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.94	TaAffx.53446.1.S1_at	CA692249	-	-	6e-2	At1g61860	protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.93	Ta.26748.1.S1_at	CD491037	-	-	4e-1	At2g38630	-	O.I.	H.G.	S.X.	Please select
0.42	60.9	0.95	TaAffx.112158.1.S1_at	CA626538	-	-	2e+1	At3g28590	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	60.9	0.94	TaAffx.64591.1.S1_at	BJ288225	-	-	1e+0	At1g19010	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	59.6	0.94	TaAffx.4913.1.S1_at	CA728728	-	-	2e+1	At5g67060	HEC1 (HECATE 1)	O.I.	H.G.	S.X.	Please select
0.41	59.6	0.94	TaAffx.50210.1.S1_at	CA744417	-	-	7e-2	At1g60880	AGL56	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.95	TaAffx.30673.1.S1_at	CA623010	-	-	7e-11	At4g25630	FIB2 (FIBRILLARIN 2)	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.93	TaAffx.65462.1.S1_at	BJ245082	-	-	9e-1	At3g18300	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.94	TaAffx.58533.1.S1_at	CA618813	-	-	1e+0	At5g47700	60S acidic ribosomal protein P1 (RPP1C)	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.93	Ta.22060.1.A1_at	BG906078	-	-	2e-1	At2g20690	lumazine-binding family protein	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.94	TaAffx.31791.1.S1_at	CA607567	-	-	7e-1	At5g26717	-	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.94	Ta.9084.3.S1_at	CA666296	-	-	1e+1	At5g50050	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.94	TaAffx.112158.1.S1_x_at	CA626538	-	-	2e+1	At3g28590	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.94	Ta.26670.1.A1_at	CD491523	-	-	9e-20	At4g26850	VTC2 (vitamin c defective 2)	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.94	TaAffx.4898.1.S1_at	CA729097	-	-	4e+0	At2g01530	MLP329 (MLP-LIKE PROTEIN 329)	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.93	TaAffx.112465.1.S1_s_at	CA623726	-	-	3e-13	At4g00360	CYP86A2 (CYTOCHROME P450 86 A2)	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.94	TaAffx.25411.1.S1_at	CA700489	-	-	4e+0	At4g35320	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.93	TaAffx.29371.1.S1_at	CA644147	-	-	4e+0	At5g18310	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.95	TaAffx.3664.1.S1_at	CD876496	-	-	2e+0	At2g47710	universal stress protein (USP) family protein	O.I.	H.G.	S.X.	Please select
0.28	39.2	0.94	TaAffx.34241.2.S1_at	CA722326	-	-	4e+0	At5g51960	-	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.93	Ta.10689.2.S1_x_at	CA622635	-	-	4e+0	At1g21323	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.95	Ta.3203.2.S1_x_at	CA621738	-	-	5e-6	At1g27530	-	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.95	TaAffx.55653.1.S1_at	CA663094	-	-	1e+1	At4g20030	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.93	TaAffx.132656.2.S1_at	CA600729	-	-	1e+0	At1g76500	SOB3 (SUPPRESSOR OF PHYB-4#3)	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.94	TaAffx.64474.2.S1_at	BJ289837	-	-	3e-1	At3g07490	AGD11 (ARF-GAP domain 11)	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.95	Ta.3911.2.S1_s_at	CA604151	-	-	4e+0	At2g44290	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (YLS3)	O.I.	H.G.	S.X.	Please select
0.20	24.0	0.94	Ta.25400.1.A1_at	CD490744	-	-	1e-1	At1g62060	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.4	98.2	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.0	97.4	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.5	96.9	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.3	96.7	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.9	96.1	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.8	96.0	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.8	96.0	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.5	95.4	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.4	95.2	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.8	93.6	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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