Co-expression analysis

Gene ID TaAffx.85394.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g25855: unknown protein (HF=1e+0)
Module size 6 genes
NF 0.49
%ile 75.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.83TaAffx.85394.1.S1_atCA623075--1e+0At3g25855unknown proteinO.I.H.G.S.X.
0.6786.30.93TaAffx.106823.1.S1_atCA710938--4e+0At5g55570unknown proteinO.I.H.G.S.X.
0.5576.80.94TaAffx.106823.1.S1_x_atCA710938--4e+0At5g55570unknown proteinO.I.H.G.S.X.
0.5072.40.94Ta.14479.3.S1_x_atCA630294--7e-18At2g05830eukaryotic translation initiation factor 2B family protein / eIF-2B family proteinO.I.H.G.S.X.
0.3549.80.95Ta.3478.3.S1_x_atCA637826--2e-11At1g69670CUL3B (CULLIN 3B)O.I.H.G.S.X.
0.1719.80.95TaAffx.25126.1.S1_atCA705922--3e+0At3g17460PHD finger family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.999.1GSM324493Si+ B+ rep1GSE12936Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildewLink to GEO
8.898.9GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
7.498.6GSM324492Si+ B- rep3GSE12936Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildewLink to GEO
5.497.7GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.297.5GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.197.5GSM324484Si- B- rep1GSE12936Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildewLink to GEO
4.997.3GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.496.8GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.896.0GSM314289tissue type: 22 DAP endosperm - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
3.795.8GSM111232genotype H8 developing seed at 5 days after anthesis, biological rep1GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os02g0267300, orthologous to the query gene, TaAffx.85394.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8796.6Os02g0267300At3g25855--2e+0At4g14600-O.I.H.G.S.X.
0.6382.7Os06g0659400At3g25855-Protein of unknown function DUF231 domaincontaining protein2e-1At1g78710unknown proteinO.I.H.G.S.X.
0.6281.5Os11g0538400At3g25855-Hypothetical protein1e+0At4g09730DEAD/DEAH box helicase, putativeO.I.H.G.S.X.
0.6281.5Os11g0269400At3g25855--1e+0At5g44900transmembrane receptorO.I.H.G.S.X.
0.6181.2Os01g0592600At3g25855--5e-1At2g18410unknown proteinO.I.H.G.S.X.
0.5978.0Os12g0639400At3g25855-AAA ATPase, central region domain containingprotein1e-2At1g43910AAA-type ATPase family proteinO.I.H.G.S.X.
0.5471.9Os07g0203000At3g25855--4e-1At5g10750unknown proteinO.I.H.G.S.X.
0.5471.9Os02g0630900At3g25855--2e-1At4g03320tic20-IV (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 20-IV)O.I.H.G.S.X.
0.5471.9Os01g0157200At3g25855-Conserved hypothetical protein3e+0At5g47370HAT2O.I.H.G.S.X.
0.5371.3Os08g0184900At3g25855--2e-2At4g00130-O.I.H.G.S.X.
0.5371.3Os01g0135400At3g25855-Conserved hypothetical protein1e+0At5g44450methyltransferaseO.I.H.G.S.X.
0.5168.7Os05g0561900At3g25855-Hypothetical protein6e-2At5g52830WRKY27O.I.H.G.S.X.
0.5168.7Os10g0381200At3g25855--2e+0At5g20110dynein light chain, putativeO.I.H.G.S.X.
0.4964.4Os01g0208550At3g25855--1e+1At4g02910unknown proteinO.I.H.G.S.X.
0.4863.7Os01g0651600At3g25855--3e-1At5g18920unknown proteinO.I.H.G.S.X.
0.4863.7Os03g0556350At3g25855--4e-3At5g40630ubiquitin family proteinO.I.H.G.S.X.
0.4863.7Os10g0435900At3g25855--9e+0At5g65180-O.I.H.G.S.X.
0.4660.9Os10g0557700At3g25855-Conserved hypothetical protein1e+0At5g41350zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.4660.9Os12g0115833At3g25855--1e+1At5g11280unknown proteinO.I.H.G.S.X.
0.4458.1Os01g0746000At3g25855--7e-2At1g61930unknown proteinO.I.H.G.S.X.
0.4458.1Os03g0677200At3g25855--3e+0At3g04120GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)O.I.H.G.S.X.
0.4458.1Os10g0428100At3g25855--4e-1At3g44950glycine-rich proteinO.I.H.G.S.X.
0.4355.4Os07g0250100At3g25855-UDP-glucuronosyl/UDP-glucosyltransferase familyprotein1e-1At1g18400BEE1 (BR Enhanced Expression 1)O.I.H.G.S.X.
0.4253.9Os07g0497300At3g25855--6e+0At2g39170unknown proteinO.I.H.G.S.X.
0.3644.0Os01g0956400At3g25855--6e+0At4g08670protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.3541.7Os07g0583100At3g25855--4e-1At5g11770NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrialO.I.H.G.S.X.
0.3541.7Os05g0201200At3g25855--2e+0At5g45880pollen Ole e 1 allergen and extensin family proteinO.I.H.G.S.X.
0.3440.0Os05g0278600At3g25855--4e-1At2g36210auxin-responsive family proteinO.I.H.G.S.X.
0.3338.8Os08g0247000At3g25855-Conserved hypothetical protein7e-2At3g19970unknown proteinO.I.H.G.S.X.
0.3236.3Os01g0966050At3g25855--4e-2At5g01830armadillo/beta-catenin repeat family protein / U-box domain-containing proteinO.I.H.G.S.X.
0.3236.3Os01g0280100At3g25855--7e-1At5g28610-O.I.H.G.S.X.
0.3236.3Os04g0231400At3g25855--2e+0At1g75870unknown proteinO.I.H.G.S.X.
0.2931.1Os08g0125400At3g25855--2e-1At3g28560-O.I.H.G.S.X.
0.2422.4Os02g0131900At3g25855--2e+0At3g60200unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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