Co-expression analysis

Gene ID TaAffx.85394.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g25855: unknown protein (HF=1e+0)
Module size 6 genes
NF 0.49
%ile 75.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.83TaAffx.85394.1.S1_atCA623075--1e+0At3g25855unknown proteinO.I.H.G.S.X.
0.6786.30.93TaAffx.106823.1.S1_atCA710938--4e+0At5g55570unknown proteinO.I.H.G.S.X.
0.5576.80.94TaAffx.106823.1.S1_x_atCA710938--4e+0At5g55570unknown proteinO.I.H.G.S.X.
0.5072.40.94Ta.14479.3.S1_x_atCA630294--7e-18At2g05830eukaryotic translation initiation factor 2B family protein / eIF-2B family proteinO.I.H.G.S.X.
0.3549.80.95Ta.3478.3.S1_x_atCA637826--2e-11At1g69670CUL3B (CULLIN 3B)O.I.H.G.S.X.
0.1719.80.95TaAffx.25126.1.S1_atCA705922--3e+0At3g17460PHD finger family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.999.1GSM324493Si+ B+ rep1GSE12936Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildewLink to GEO
8.898.9GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
7.498.6GSM324492Si+ B- rep3GSE12936Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildewLink to GEO
5.497.7GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.297.5GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.197.5GSM324484Si- B- rep1GSE12936Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildewLink to GEO
4.997.3GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.496.8GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.896.0GSM314289tissue type: 22 DAP endosperm - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
3.795.8GSM111232genotype H8 developing seed at 5 days after anthesis, biological rep1GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g25855, orthologous to the query gene, TaAffx.85394.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
1.00100.0At3g25855822180unknown proteinF:unknown;P:unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.9897.8At2g34530818016unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.9897.8At5g04890830370RTM2 (RESTRICTED TEV MOVEMENT 2)Specifically restricts the long-distance movement of tobacco etch potyvirus (TEV) without involving either hypersensitive cell death or systemic acquired resistance. Multidomain protein containing an N-terminal region with high similarity to plant small heat shock proteins (HSPs).O.I.H.G.S.X.
0.9897.8At2g14620815950xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putativeF:hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, apoplast, cell wall;PFBOO.I.H.G.S.X.
0.9897.8At3g03200821226anac045 (Arabidopsis NAC domain containing protein 45)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;POVMBO.I.H.G.S.X.
0.9897.8At3g10680820237heat shock protein-relatedF:molecular_function unknown;P:biological_process unknown;C:unknown;OMBFPVAO.I.H.G.S.X.
0.9897.8At3g58350825004meprin and TRAF homology domain-containing protein / MATH domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMBO.I.H.G.S.X.
0.9897.8At5g25370832609PLDALPHA3 (PHOSPHLIPASE D ALPHA 3)member of C2-PLD subfamily. Analyses on the gene structures/sequences, overall amino acid sequences, and domain structures indicate that PLDalpha3 is most closely related to other two PLDalphas than to other PLDs. Phylogenetic analysis has not identified a true ortholog for PLDalpha3. Involved in hyperosmotic response.O.I.H.G.S.X.
0.9797.6At5g04310830310pectate lyase family proteinF:pectate lyase activity;P:biological_process unknown;C:anchored to membrane;BPFOO.I.H.G.S.X.
0.9797.6At1g02950838240ATGSTF4 (GLUTATHIONE S-TRANSFERASE F4)Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).O.I.H.G.S.X.
0.9797.6At1g06490837160ATGSL07 (glucan synthase-like 7)encodes a gene similar to callose synthaseO.I.H.G.S.X.
0.9797.6At1g63310842637-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.9797.6At1g68230843152reticulon family protein (RTNLB14)F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;PO.I.H.G.S.X.
0.9797.6At3g13590820561DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;POO.I.H.G.S.X.
0.9797.6At3g15800820823glycosyl hydrolase family 17 proteinF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to membrane;POO.I.H.G.S.X.
0.9797.6At3g18260821354reticulon family protein (RTNLB9)F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;MPOFO.I.H.G.S.X.
0.9797.6At3g18670821398ankyrin repeat family proteinF:protein binding;P:unknown;C:unknown;MOPBFAVO.I.H.G.S.X.
0.9797.6At4g09950826585avirulence-responsive family protein / avirulence induced gene (AIG1) family proteinF:GTP binding;P:response to bacterium;C:cellular_component unknown;MOBFPAVO.I.H.G.S.X.
0.9797.6At4g12580826871unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPBO.I.H.G.S.X.
0.9797.6At4g24250828526MLO13 (MILDEW RESISTANCE LOCUS O 13)A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO13 belongs to the clade II, with ATMLO1 and ATMLO15. The gene is expressed during early seedling growth, in root and cotyledon vascular system, in pollen and also in placenta of developing siliques, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).O.I.H.G.S.X.
0.9797.6At5g48060834858C2 domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFO.I.H.G.S.X.
0.9797.6At5g48690834927-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVAO.I.H.G.S.X.
0.9797.6At5g49320834992unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.9797.6At5g56720835773malate dehydrogenase, cytosolic, putativeF:in 6 functions;P:cellular carbohydrate metabolic process, glycolysis, malate metabolic process, carbohydrate metabolic process, metabolic process;C:membrane;BOMPFAO.I.H.G.S.X.
0.9797.6At5g61280836249remorin family proteinF:DNA binding;P:biological_process unknown;C:cellular_component unknown;POMBFO.I.H.G.S.X.
0.9797.6At5g67050836840lipase class 3 family proteinF:triacylglycerol lipase activity;P:lipid metabolic process;C:membrane;OPBFMVO.I.H.G.S.X.
0.9797.6At1g61760842473harpin-induced protein-related / HIN1-related / harpin-responsive protein-relatedF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.H.G.S.X.
0.9797.6At1g62045842500-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.9797.6At1g77700844106pathogenesis-related thaumatin family proteinF:molecular_function unknown;P:response to other organism;C:cellular_component unknown;PFMBOVO.I.H.G.S.X.
0.9797.6At3g20450821590-F:molecular_function unknown;P:intracellular protein transport;C:endomembrane system, integral to membrane, endoplasmic reticulum;PO.I.H.G.S.X.
0.9797.6At5g20870832210glycosyl hydrolase family 17 proteinF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to membrane;PFOBO.I.H.G.S.X.
0.9797.6At5g45320834568-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.9797.6At3g17380821002meprin and TRAF homology domain-containing protein / MATH domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFOO.I.H.G.S.X.
0.9797.6At5g38070833787zinc finger (C3HC4-type RING finger) family proteinF:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;MPOFVO.I.H.G.S.X.
0.9797.6At1g05760837084RTM1 (restricted tev movement 1)Specifically restrict the long-distance movement of tobacco etch potyvirus (TEV) without involving either hypersensitive cell death or systemic acquired resistanceO.I.H.G.S.X.
0.9697.3At1g13920837952remorin family proteinF:DNA binding;P:biological_process unknown;C:cellular_component unknown;MOFPBVO.I.H.G.S.X.
0.9697.3At1g29520839829AWPM-19-like membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;PO.I.H.G.S.X.
0.9697.3At3g07420819930NS2Encodes an asparaginyl-tRNA synthetase.O.I.H.G.S.X.
0.9697.3At4g35970829751APX5 (ASCORBATE PEROXIDASE 5)Encodes a microsomal ascorbate peroxidase APX5. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms.O.I.H.G.S.X.
0.9697.3At5g18970832015AWPM-19-like membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;PO.I.H.G.S.X.
0.9697.3At1g05770837085jacalin lectin family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.9697.3At1g73370843672SUS6 (SUCROSE SYNTHASE 6)Encodes a protein with sucrose synthase activity (SUS6).O.I.H.G.S.X.
0.9697.3At2g27140817256heat shock family proteinF:molecular_function unknown;P:response to heat;C:membrane;PBOMO.I.H.G.S.X.
0.9697.3At5g02140831881thaumatin-like protein, putativeF:molecular_function unknown;P:response to other organism;C:endomembrane system;PFMBOVO.I.H.G.S.X.
0.9697.3At5g03510831818zinc finger (C2H2 type) family proteinF:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MPOO.I.H.G.S.X.
0.9697.3At2g41300818729strictosidine synthaseF:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endomembrane system;PMBOAO.I.H.G.S.X.
0.9697.3At5g37180833692SUS5Encodes a protein with sucrose synthase activity (SUS5).O.I.H.G.S.X.
0.9597.0At4g16400827334unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.9597.0At4g16640827365matrix metalloproteinase, putativeF:metallopeptidase activity, metalloendopeptidase activity;P:proteolysis, metabolic process;C:anchored to membrane;MOPBVFAO.I.H.G.S.X.
0.9597.0At4g37445829899-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.9597.0At5g38770833868AtGDU7 (Arabidopsis thaliana GLUTAMINE DUMPER 7)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.9597.0At1g11570837700nuclear transport factor 2 (NTF2), putativeF:protein transporter activity;P:transport, protein import into nucleus;C:nucleus, intracellular;MFPOO.I.H.G.S.X.
0.9597.0At3g47180823871zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVBO.I.H.G.S.X.
0.9597.0At1g05610837066APS2 (ADP-glucose pyrophoshorylase small subunit 2)Encodes the small subunit of ADP-glucose pyrophosphorylase. The small subunit is the catalytic isoform responsible for ADP-glucose pyrophosphorylase activity. The presence of the small subunit is required for large subunit stability. Two isoforms of the small subunit (ApS1 and ApS2) have been described. ApS2 is a minor small subunit isoform present in all plant tissues tested.O.I.H.G.S.X.
0.9597.0At1g11915837741unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.9496.7At1g10460837586GLP7 (GERMIN-LIKE PROTEIN 7)germin-like protein (GLP7)O.I.H.G.S.X.
0.9496.7At4g21310827879unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.9496.7At1g54330841874ANAC020 (Arabidopsis NAC domain containing protein 20)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PO.I.H.G.S.X.
0.9496.7At2g41200818719unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.9496.7At5g04680830346-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFO.I.H.G.S.X.
0.9496.7At1g31200840008ATPP2-A9 (Phloem protein 2-A9)F:carbohydrate binding;P:unknown;C:unknown;PO.I.H.G.S.X.
0.9496.7At1g65910842903anac028 (Arabidopsis NAC domain containing protein 28)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;POMO.I.H.G.S.X.
0.9195.6At1g618303767602-F:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.9095.1At2g39830818570DAR2 (DA1-RELATED PROTEIN 2)F:zinc ion binding;P:unknown;C:chloroplast;MOPFBO.I.H.G.S.X.
0.9095.1At2g15310816020ATARFB1A (ADP-ribosylation factor B1A)A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to ADP-ribosylation factor (GI:861205) (Chlamydomonas reinhardtii), other ARFs and ARF-like proteins.O.I.H.G.S.X.
0.8994.6At5g11990831072proline-rich family proteinF:unknown;P:biological_process unknown;C:anchored to membrane;MPOFBVAO.I.H.G.S.X.
0.8994.6At2g18380816353transcription factorF:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;FPMOO.I.H.G.S.X.
0.8894.0At5g17260831591anac086 (Arabidopsis NAC domain containing protein 86)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;POO.I.H.G.S.X.
0.8793.5At2g466303768746unknown proteinF:unknown;P:unknown;C:chloroplastO.I.H.G.S.X.
0.8793.5At5g40980834100unknown proteinF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PO.I.H.G.S.X.
0.8693.1At5g01480831674DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMOO.I.H.G.S.X.
0.8693.1At4g33490829486aspartic-type endopeptidaseF:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;POMFO.I.H.G.S.X.
0.8391.4At2g34540818017unknown proteinF:unknown;P:biological_process unknown;C:unknown;PO.I.H.G.S.X.
0.8290.9At1g75720843906unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.H.G.S.X.
0.7989.1At5g07710830664exonuclease family proteinF:exonuclease activity, nucleic acid binding;P:biological_process unknown;C:intracellular;BOPO.I.H.G.S.X.
0.7989.1At5g03530831810RABC2A (RAB GTPASE HOMOLOG C2A)Encodes a member of the Rab GTPase family of proteins. This protein interacts with the tail region of a myosin XI protein (AT5G43900) in a GTP-dependent manner. CFP:RabC2a appears to co-localize with peroxisomes.O.I.H.G.S.X.
0.7888.6At5g26190832688DC1 domain-containing proteinF:protein binding, zinc ion binding;P:unknown;C:intracellular;POMO.I.H.G.S.X.
0.6882.2At3g05620819728pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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