Co-expression analysis

Gene ID TaAffx.8533.2.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g21230: 4CL5 (4-coumarate:CoA ligase 5) (HF=4e-3)
Module size 6 genes
NF 0.04
%ile 13.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.84TaAffx.8533.2.S1_atCA627108--4e-3At3g212304CL5 (4-coumarate:CoA ligase 5)O.I.H.G.S.X.
0.4464.50.94Ta.28579.2.S1_atCA611367--4e+0At5g67580TRB2O.I.H.G.S.X.
0.4058.40.94TaAffx.13785.2.S1_atCA708591--7e-8At2g34690ACD11 (ACCELERATED CELL DEATH 11)O.I.H.G.S.X.
0.3651.90.94Ta.19361.2.S1_atCA650802--5e-15At4g12650-O.I.H.G.S.X.
0.034.70.92TaAffx.57555.1.S1_atCA618738--2e+1At5g67600unknown proteinO.I.H.G.S.X.
0.012.40.92TaAffx.110167.1.S1_atCA662870--4e+0At4g14440HCD1 (3-HYDROXYACYL-COA DEHYDRATASE 1)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.399.5GSM111233genotype H8 developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
12.099.4GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.595.4GSM139917Anther leptotene-pachytene rep2GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
3.595.4GSM139924Anther telophaseI-telophaseII rep3GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
3.495.2GSM139922Anther telophaseI-telophaseII rep1GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
3.395.0GSM139914Anther pre-meiosis rep2GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
3.395.0GSM139923Anther telophaseI-telophaseII rep2GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
3.194.5GSM139918Anther leptotene-pachytene rep3GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
3.094.3GSM298068Leaf tissue of Paragon at 5 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
2.692.9GSM139925Anther tetrads rep1GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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