Co-expression analysis

Gene ID	TaAffx.84709.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At4g14540: NF-YB3 (NUCLEAR FACTOR Y, SUBUNIT B3) (HF=3e+0)
Module size	6 genes
NF	0.61
%ile	86.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.48	69.0	0.93	TaAffx.84709.1.S1_at	CA630743	-	-	3e+0	At4g14540	NF-YB3 (NUCLEAR FACTOR Y, SUBUNIT B3)	O.I.	H.G.	S.X.	Please select
0.80	92.2	0.93	Ta.6692.2.A1_at	CA678021	-	-	1e-6	At4g36960	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.61	82.0	0.93	TaAffx.78296.1.S1_at	CA734700	-	-	8e-1	At5g45700	NLI interacting factor (NIF) family protein	O.I.	H.G.	S.X.	Please select
0.59	79.8	0.93	TaAffx.8084.2.S1_at	CA742580	-	-	3e-2	At5g02480	-	O.I.	H.G.	S.X.	Please select
0.55	76.8	0.93	Ta.13274.2.A1_at	CA613778	-	-	7e-2	At5g05360	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.93	Ta.28190.2.S1_a_at	CA654134	-	-	7e-2	At5g07620	protein kinase family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.8	97.9	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
5.2	97.5	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.9	97.3	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.6	97.0	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.4	96.8	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.0	94.3	GSM111147	genotype RL4452 developing seed at 5 days after anthesis, biological rep2	GSE4929	wheat expression level polymorphism study parental genotypes 2 biological reps
2.8	93.6	GSM298064	Crown tissue of Harnesk at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
2.8	93.6	GSM298063	Crown tissue of Harnesk at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
2.6	92.9	GSM138179	genotype A88 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.6	92.9	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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