Co-expression analysis

Gene ID TaAffx.84460.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g23130: SUP (SUPERMAN) (HF=6e-1)
Module size 6 genes
NF 0.32
%ile 52.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.2532.10.78TaAffx.84460.1.S1_atCA636346--6e-1At3g23130SUP (SUPERMAN)O.I.H.G.S.X.
0.4464.50.92Ta.4216.3.A1_atCA615258--1e+0At1g32400TOM2A (TOBAMOVIRUS MULTIPLICATION 2A)O.I.H.G.S.X.
0.4058.40.90TaAffx.83004.1.S1_atCA663511--4e+0At4g11290peroxidase, putativeO.I.H.G.S.X.
0.3651.90.93TaAffx.27716.1.S1_atCA671981--1e+0At5g13870EXGT-A4 (ENDOXYLOGLUCAN TRANSFERASE A4)O.I.H.G.S.X.
0.2939.20.90TaAffx.57313.1.S1_atCA632118--1e+0At5g44080bZIP transcription factor family proteinO.I.H.G.S.X.
0.2939.20.92TaAffx.5994.1.S1_atCA693717--1e+1At5g41400zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.299.4GSM298091Leaf tissue of Solstice at 9 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
10.499.2GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
9.199.0GSM298057Leaf tissue of Harnesk at 9 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
9.099.0GSM315202target strand labeled: Sense - rep1GSE12528Wheat "Chinese Spring" natural antisense transcription surveyLink to GEO
7.998.7GSM298058Leaf tissue of Harnesk at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
6.898.4GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
6.198.1GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.897.2GSM298069Leaf tissue of Paragon at 9 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.596.9GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.296.6GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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