Co-expression analysis

Gene ID	TaAffx.84372.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g01100: 60S acidic ribosomal protein P1 (RPP1A) (HF=3e-4)
Module size	6 genes
NF	0.67
%ile	91.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.90	TaAffx.84372.1.S1_at	CA654239	-	-	3e-4	At1g01100	60S acidic ribosomal protein P1 (RPP1A)	O.I.	H.G.	S.X.	Please select
0.80	92.2	0.92	Ta.5456.1.A1_at	BJ278573	WRKY19-b transcription factor	-	4e+0	At4g02730	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.60	81.0	0.92	TaAffx.16007.1.S1_at	BQ801031	-	-	2e+0	At3g22942	AGG2 (G-PROTEIN GAMMA SUBUNIT 2)	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.92	TaAffx.29213.1.S1_at	CA647938	-	-	3e+0	At5g06480	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.92	TaAffx.112202.1.S1_s_at	CA626092	-	-	1e+0	At3g46160	protein kinase-related	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.91	Ta.28617.1.S1_at	BJ229114	-	-	7e-7	At4g15470	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.2	99.6	GSM298057	Leaf tissue of Harnesk at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
12.1	99.4	GSM298058	Leaf tissue of Harnesk at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
6.6	98.3	GSM298076	Crown tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
5.5	97.8	GSM314287	tissue type: 22 DAP endosperm - rep1	GSE12508	Transcription patterns during wheat development
5.1	97.5	GSM314289	tissue type: 22 DAP endosperm - rep3	GSE12508	Transcription patterns during wheat development
4.7	97.1	GSM298082	Leaf tissue of Solstice at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.7	97.1	GSM298064	Crown tissue of Harnesk at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.7	97.1	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.4	96.8	GSM298063	Crown tissue of Harnesk at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.2	96.6	GSM298075	Crown tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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