Co-expression analysis

Gene ID	TaAffx.84143.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At4g05070: unknown protein (HF=2e+1)
Module size	7 genes
NF	0.10
%ile	22.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.52	73.7	0.96	TaAffx.84143.1.S1_at	CA714749	-	-	2e+1	At4g05070	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.96	Ta.5102.1.S1_at	CK171554	-	-	2e+0	At5g07600	oleosin / glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.96	Ta.6824.1.S1_x_at	CD891260	-	-	1e-14	At5g14040	mitochondrial phosphate transporter	O.I.	H.G.	S.X.	Please select
0.14	15.8	0.96	TaAffx.119135.1.S1_x_at	AJ615948	-	-	3e+0	At5g26717	-	O.I.	H.G.	S.X.	Please select
0.12	13.3	0.96	Ta.16223.1.S1_at	CA602882	-	-	4e+0	At3g60966	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.10	11.3	0.96	TaAffx.38158.4.S1_x_at	CA630021	-	-	1e-3	At2g44330	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.04	5.8	0.96	Ta.359.3.S1_x_at	CA685131	-	-	2e-1	At3g28140	calmodulin-binding protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.5	99.1	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
5.9	98.0	GSM298076	Crown tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
5.3	97.6	GSM298094	Crown tissue of Solstice at 9 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
5.1	97.5	GSM298075	Crown tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.5	96.9	GSM298073	Crown tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.2	96.6	GSM314270	tissue type: immature inflorescence - rep2	GSE12508	Transcription patterns during wheat development
3.9	96.1	GSM298071	Crown tissue of Paragon at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.8	96.0	GSM298072	Crown tissue of Paragon at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.5	95.4	GSM314289	tissue type: 22 DAP endosperm - rep3	GSE12508	Transcription patterns during wheat development
3.5	95.4	GSM314269	tissue type: immature inflorescence - rep1	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

A co-expression module including the grape gene, 1617677_at, orthologous to the query gene, TaAffx.84143.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	77.3	1617677_at	At4g05070	hypothetical protein LOC100260994	-	2e-1	At3g48890	ATMP2	O.I.	H.G.	S.X.	Please select
0.77	92.3	1620866_at	At4g05070	hypothetical protein LOC100245423	-	6e-2	At5g38400	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	61.5	1607335_at	At4g05070	hypothetical protein LOC100245908	-	1e-20	At3g06050	PRXIIF (PEROXIREDOXIN IIF)	O.I.	H.G.	S.X.	Please select
0.33	45.7	1618263_at	At4g05070	hypothetical protein LOC100252374	-	7e-21	At4g17830	peptidase M20/M25/M40 family protein	O.I.	H.G.	S.X.	Please select
0.30	39.4	1620947_at	At4g05070	hypothetical protein LOC100257258	-	8e-47	At5g53850	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.18	19.4	1614839_s_at	At4g05070	hypothetical protein LOC100251023	-	3e-10	At1g04290	thioesterase family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Zea_mays

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