CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID TaAffx.84143.1.S1_at

Gene name
Homology with Arabidopsis Similar to At4g05070: unknown protein (HF=2e+1)

Module size 7 genes

NF 0.10

%ile 22.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.52 73.7 0.96 TaAffx.84143.1.S1_at CA714749 - - 2e+1 At4g05070 unknown protein O.I. H.G. S.X.
0.29 39.2 0.96 Ta.5102.1.S1_at CK171554 - - 2e+0 At5g07600 oleosin / glycine-rich protein O.I. H.G. S.X.
0.17 19.8 0.96 Ta.6824.1.S1_x_at CD891260 - - 1e-14 At5g14040 mitochondrial phosphate transporter O.I. H.G. S.X.
0.14 15.8 0.96 TaAffx.119135.1.S1_x_at AJ615948 - - 3e+0 At5g26717 - O.I. H.G. S.X.
0.12 13.3 0.96 Ta.16223.1.S1_at CA602882 - - 4e+0 At3g60966 protein binding / zinc ion binding O.I. H.G. S.X.
0.10 11.3 0.96 TaAffx.38158.4.S1_x_at CA630021 - - 1e-3 At2g44330 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.04 5.8 0.96 Ta.359.3.S1_x_at CA685131 - - 2e-1 At3g28140 calmodulin-binding protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.5 99.1 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
5.9 98.0 GSM298076 Crown tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
5.3 97.6 GSM298094 Crown tissue of Solstice at 9 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
5.1 97.5 GSM298075 Crown tissue of Paragon at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
4.5 96.9 GSM298073 Crown tissue of Paragon at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
4.2 96.6 GSM314270 tissue type: immature inflorescence - rep2 GSE12508 Transcription patterns during wheat development
3.9 96.1 GSM298071 Crown tissue of Paragon at 3 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
3.8 96.0 GSM298072 Crown tissue of Paragon at 3 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
3.5 95.4 GSM314289 tissue type: 22 DAP endosperm - rep3 GSE12508 Transcription patterns during wheat development
3.5 95.4 GSM314269 tissue type: immature inflorescence - rep1 GSE12508 Transcription patterns during wheat development

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.43837.1.A1_s_at, orthologous to the query gene, TaAffx.84143.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.46 73.7 PtpAffx.43837.1.A1_s_at At4g05070 hypothetical protein - 3e-6 At4g24026 unknown protein O.I. H.G. S.X.
0.36 61.6 PtpAffx.8523.2.S1_a_at At4g05070 hypothetical protein - 4e-32 At5g56530 unknown protein O.I. H.G. S.X.
0.29 50.5 PtpAffx.128165.1.A1_a_at At4g05070 hypothetical protein - 1e+0 At1g76930 ATEXT4 (EXTENSIN 4) O.I. H.G. S.X.
0.14 23.5 PtpAffx.206196.1.S1_at At4g05070 hypothetical protein - 4e-19 At2g19090 unknown protein O.I. H.G. S.X.
0.10 16.3 PtpAffx.254.1.S1_s_at At4g05070 hypothetical protein - 1e-20 At2g47115 unknown protein O.I. H.G. S.X.
0.01 2.2 PtpAffx.30944.1.A1_at At4g05070 hypothetical protein - 4e-22 At4g35490 MRPL11 (MITOCHONDRIAL RIBOSOMAL PROTEIN L11) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Vitis_vinifera
Zea_mays

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