Co-expression analysis

Gene ID	TaAffx.84091.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At4g19850: ATPP2-A2 (HF=3e-2)
Module size	11 genes
NF	0.38
%ile	60.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.83	TaAffx.84091.1.S1_at	CA645065	-	-	3e-2	At4g19850	ATPP2-A2	O.I.	H.G.	S.X.	Please select
0.48	69.0	0.90	TaAffx.57313.1.S1_at	CA632118	-	-	1e+0	At5g44080	bZIP transcription factor family protein	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.90	TaAffx.93296.1.S1_at	BJ224490	-	-	6e-2	At3g26790	FUS3 (FUSCA 3)	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.91	Ta.30830.1.S1_at	CN008999	-	-	1e+0	At4g03170	DNA binding	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.92	TaAffx.5994.1.S1_at	CA693717	-	-	1e+1	At5g41400	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.34	48.1	0.91	TaAffx.58364.1.S1_at	CA620231	-	-	2e+1	At4g10610	CID12	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.94	Ta.9465.2.A1_at	CA637378	-	-	1e-3	At2g40110	yippee family protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.93	Ta.25488.2.S1_at	CA744848	-	-	1e+0	At4g28730	glutaredoxin family protein	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.95	Ta.7168.3.S1_at	CA745143	-	-	6e-34	At4g30600	signal recognition particle receptor alpha subunit family protein	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.91	Ta.19055.1.A1_at	CK205684	-	-	8e-23	At4g22130	SRF8 (STRUBBELIG-RECEPTOR FAMILY 8)	O.I.	H.G.	S.X.	Please select
0.18	21.0	0.91	Ta.21490.1.S1_at	BG907979	-	-	5e+0	At5g50690	AtHSD7 (hydroxysteroid dehydrogenase 7)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.9	98.7	GSM314278	tissue type: anthers, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
6.6	98.3	GSM324493	Si+ B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
6.0	98.0	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.7	97.9	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
5.4	97.7	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.2	97.5	GSM314280	tissue type: anthers, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
5.0	97.4	GSM315202	target strand labeled: Sense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
4.5	96.9	GSM314279	tissue type: anthers, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
3.6	95.6	GSM246386	SB169_Stem_ rep1_at anthesis	GSE9767	Genotypic differences in water soluble carbohydrate metabolism in stem
3.5	95.4	GSM246391	SB62_Stem_ rep2_at anthesis	GSE9767	Genotypic differences in water soluble carbohydrate metabolism in stem

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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