Co-expression analysis

Gene ID	TaAffx.8388.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g15960: KIN1 (HF=7e-2)
Module size	6 genes
NF	0.20
%ile	35.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.86	TaAffx.8388.1.S1_at	CA626252	-	-	7e-2	At5g15960	KIN1	O.I.	H.G.	S.X.	Please select
0.19	22.4	0.95	TaAffx.78517.1.S1_at	CA731451	-	-	4e+0	At2g25720	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.94	TaAffx.80668.1.S1_at	CA694164	-	-	1e+0	At5g47700	60S acidic ribosomal protein P1 (RPP1C)	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.95	TaAffx.113756.1.S1_at	CA605644	-	-	1e-3	At5g04250	OTU-like cysteine protease family protein	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.94	TaAffx.24685.1.S1_at	CA714323	-	-	3e+0	At2g36080	DNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.08	9.4	0.94	TaAffx.77881.1.S1_at	CA741326	-	-	2e+1	Atcg00065	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.6	99.5	GSM314276	tissue type: pistil, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
12.8	99.4	GSM314277	tissue type: pistil, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
11.8	99.3	GSM314275	tissue type: pistil, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
8.2	98.8	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
7.7	98.7	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
6.1	98.1	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
5.8	97.9	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.4	96.8	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
4.1	96.4	GSM314279	tissue type: anthers, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
3.9	96.1	GSM298079	Leaf tissue of Solstice at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the barley gene, Contig6008_s_at, orthologous to the query gene, TaAffx.8388.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	Contig6008_s_at	At5g15960	-	-	5e-4	At1g27140	ATGSTU14 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 14)	O.I.	H.G.	S.X.	Please select
0.67	84.7	Contig6007_at	At5g15960	-	-	2e+1	At5g61412	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	56.4	HX05P09r_at	At5g15960	-	-	9e-1	At5g60350	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	Contig2302_at	At5g15960	-	-	1e-25	At5g60670	60S ribosomal protein L12 (RPL12C)	O.I.	H.G.	S.X.	Please select
0.31	38.6	Contig15427_at	At5g15960	-	-	7e+0	At4g29110	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	Contig10807_at	At5g15960	-	-	1e-1	At4g22610	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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