Co-expression analysis

Gene ID	TaAffx.83763.1.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At3g53110: LOS4 (LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4) (HF=3e+0)
Module size	6 genes
NF	0.05
%ile	13.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.72	TaAffx.83763.1.S1_x_at	CA651658	-	-	3e+0	At3g53110	LOS4 (LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4)	O.I.	H.G.	S.X.	Please select
0.06	7.6	0.93	TaAffx.105503.1.S1_at	CA733364	-	-	1e+0	At5g44200	CBP20 (CAP-BINDING PROTEIN 20)	O.I.	H.G.	S.X.	Please select
0.05	6.7	0.93	TaAffx.52953.1.S1_at	CA698509	-	-	1e+0	At5g55550	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.04	5.8	0.92	TaAffx.105981.1.S1_x_at	CA727065	-	-	3e-1	At4g11870	unknown protein	O.I.	H.G.	S.X.	Please select
0.03	4.7	0.92	Ta.26385.1.A1_at	CD490935	-	-	2e-15	At3g55770	LIM domain-containing protein	O.I.	H.G.	S.X.	Please select
0.01	2.4	0.92	TaAffx.56849.1.S1_at	CA642563	-	-	1e+0	At5g05780	RPN8A (RP NON-ATPASE SUBUNIT 8A)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
18.0	99.7	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
13.1	99.4	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
7.1	98.5	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
7.0	98.5	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
6.9	98.4	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.3	98.2	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.9	97.3	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.5	96.9	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.4	96.8	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.0	96.3	GSM298090	Leaf tissue of Solstice at 5 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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