Co-expression analysis

Gene ID TaAffx.83763.1.S1_x_at
Gene name
Homology with ArabidopsisSimilar to At3g53110: LOS4 (LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4) (HF=3e+0)
Module size 6 genes
NF 0.05
%ile 13.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.72TaAffx.83763.1.S1_x_atCA651658--3e+0At3g53110LOS4 (LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4)O.I.H.G.S.X.
0.067.60.93TaAffx.105503.1.S1_atCA733364--1e+0At5g44200CBP20 (CAP-BINDING PROTEIN 20)O.I.H.G.S.X.
0.056.70.93TaAffx.52953.1.S1_atCA698509--1e+0At5g55550RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.045.80.92TaAffx.105981.1.S1_x_atCA727065--3e-1At4g11870unknown proteinO.I.H.G.S.X.
0.034.70.92Ta.26385.1.A1_atCD490935--2e-15At3g55770LIM domain-containing proteinO.I.H.G.S.X.
0.012.40.92TaAffx.56849.1.S1_atCA642563--1e+0At5g05780RPN8A (RP NON-ATPASE SUBUNIT 8A)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
18.099.7GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
13.199.4GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
7.198.5GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
7.098.5GSM111233genotype H8 developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
6.998.4GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
6.398.2GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.997.3GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.596.9GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.496.8GSM250896Tc_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.096.3GSM298090Leaf tissue of Solstice at 5 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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