Co-expression analysis

Gene ID	TaAffx.83715.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g50740: metal ion binding (HF=2e+1)
Module size	6 genes
NF	0.41
%ile	65.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	88.0	0.93	TaAffx.83715.1.S1_at	CA653254	-	-	2e+1	At5g50740	metal ion binding	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.95	TaAffx.82014.1.S1_at	CA678857	-	-	1e+0	At1g45063	copper ion binding / electron carrier	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.95	Ta.26652.1.A1_at	CD491481	-	-	1e-3	At1g36050	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.95	TaAffx.61664.1.S1_at	CA629036	-	-	2e-1	At1g59171	ATP binding / inositol pentakisphosphate 2-kinase	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.94	TaAffx.84919.1.S1_at	CA627238	-	-	2e+1	At5g39920	-	O.I.	H.G.	S.X.	Please select
0.19	22.4	0.94	TaAffx.83840.1.S1_at	CA649783	-	-	4e+0	At1g28170	sulfotransferase family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.7	99.2	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.6	98.9	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.4	98.6	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
6.8	98.4	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.0	98.0	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.8	97.9	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
5.8	97.9	GSM143507	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
5.0	97.4	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.6	97.0	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.3	96.7	GSM314256	tissue type: germinating seed, root - rep3	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage