Co-expression analysis

Gene ID TaAffx.83608.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At4g10390: protein kinase family protein (HF=4e+0)
Module size 34 genes
NF 0.38
%ile 61.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8994.60.86TaAffx.83608.1.S1_atCA655505--4e+0At4g10390protein kinase family proteinO.I.H.G.S.X.
0.5979.80.86Ta.17974.1.A1_atCA623388--4e-11At1g56045ribosomal protein L41 family proteinO.I.H.G.S.X.
0.5979.80.89Ta.9750.2.S1_atBJ222941--4e+0At3g03920Gar1 RNA-binding region family proteinO.I.H.G.S.X.
0.5678.60.88TaAffx.22980.1.S1_atCA742360--9e+0At5g22080DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.
0.5173.00.90TaAffx.106049.1.S1_atCA725389--2e-1At5g59000zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.4969.70.92TaAffx.83374.1.S1_atCA658276--2e-1At5g35620LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)O.I.H.G.S.X.
0.4969.70.88Ta.13847.1.S1_atAL829422--2e-1At4g18975pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.4767.90.90TaAffx.78900.2.S1_s_atCA725224--1e+1At5g17073unknown proteinO.I.H.G.S.X.
0.4565.20.90TaAffx.53352.2.S1_atCA678141--1e+0At1g80050APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2)O.I.H.G.S.X.
0.4464.50.87TaAffx.111939.1.S1_atCA629962--2e+0At5g18020auxin-responsive protein, putativeO.I.H.G.S.X.
0.4362.20.89Ta.5331.3.S1_atCA662298--3e-1At1g07025mitochondrial substrate carrier family proteinO.I.H.G.S.X.
0.4362.20.91TaAffx.86236.1.S1_atCA613373--3e-1At2g22260oxidoreductase, 2OG-Fe(II) oxygenase family proteinO.I.H.G.S.X.
0.4159.60.93TaAffx.26416.1.S1_atCA689143--4e+1At5g01350unknown proteinO.I.H.G.S.X.
0.4159.60.94TaAffx.111613.1.S1_atCA636910--9e-1At3g57670NTT (NO TRANSMITTING TRACT)O.I.H.G.S.X.
0.3854.70.89TaAffx.50026.1.S1_atCA746775--4e+0At5g22430unknown proteinO.I.H.G.S.X.
0.3753.00.91Ta.834.3.S1_x_atBQ608659--1e+0At5g05000TOC34 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 34)O.I.H.G.S.X.
0.3651.90.92TaAffx.75114.1.A1_atCA745557--4e+0At5g29000myb family transcription factorO.I.H.G.S.X.
0.3549.80.92TaAffx.24201.1.S1_atCA723781--1e+0At5g11950protein homodimerizationO.I.H.G.S.X.
0.3448.10.87Ta.10063.2.S1_atCA671032--1e+0At1g43667protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.3448.10.92TaAffx.50275.1.S1_atCA743483--7e-1At1g23690unknown proteinO.I.H.G.S.X.
0.3346.90.91TaAffx.50886.1.S1_atCA733813--4e+0At5g6307040S ribosomal protein S15, putativeO.I.H.G.S.X.
0.3346.90.92TaAffx.117130.1.S1_atBQ609707--3e-1At5g21910unknown proteinO.I.H.G.S.X.
0.3244.40.90TaAffx.105190.1.S1_atCA738918--1e+0At4g37685unknown proteinO.I.H.G.S.X.
0.3244.40.93Ta.5807.1.A1_atBJ296375--3e+0At5g43290WRKY49O.I.H.G.S.X.
0.3244.40.93TaAffx.121565.1.S1_atCA650791--1e+0At4g09530auxin-responsive family proteinO.I.H.G.S.X.
0.3244.40.93TaAffx.85969.1.S1_atCA618026--7e-2At3g26780catalyticO.I.H.G.S.X.
0.2939.20.87TaAffx.24681.1.S1_atCA714405--1e-2At1g80133unknown proteinO.I.H.G.S.X.
0.2939.20.86TaAffx.23369.3.A1_atCA735914--1e+0At4g31760peroxidase, putativeO.I.H.G.S.X.
0.2735.60.89TaAffx.105396.1.S1_atCA734994--3e+0At4g20440smB (small nuclear ribonucleoprotein associated protein B)O.I.H.G.S.X.
0.2430.30.94TaAffx.81077.1.S1_s_atCA732020--5e-3At3g20900unknown proteinO.I.H.G.S.X.
0.2430.30.92Ta.10340.1.S1_atBJ250665--1e+0At5g09470mitochondrial substrate carrier family proteinO.I.H.G.S.X.
0.2227.10.92TaAffx.80608.1.S1_atCA694804--1e+0At5g30495-O.I.H.G.S.X.
0.1719.80.93Ta.25608.2.S1_a_atCA739102--3e+0At1g77765unknown proteinO.I.H.G.S.X.
0.1719.80.92TaAffx.53352.2.S1_x_atCA678141--1e+0At1g80050APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.799.4GSM315203target strand labeled: Antisense - rep1GSE12528Wheat "Chinese Spring" natural antisense transcription surveyLink to GEO
8.398.8GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
7.198.5GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
6.998.4GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
6.898.4GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.497.7GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.097.4GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.797.1GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.496.8GSM250897TcLr1_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.996.1GSM250896Tc_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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