Co-expression analysis

Gene ID	TaAffx.83473.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g53742: - (HF=1e+1)
Module size	20 genes
NF	0.32
%ile	51.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.70	87.2	0.89	TaAffx.83473.1.S1_at	CA657233	-	-	1e+1	At5g53742	-	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.90	TaAffx.6658.1.S1_at	CA680759	-	-	3e+0	At1g26762	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	60.9	0.93	TaAffx.8084.2.S1_at	CA742580	-	-	3e-2	At5g02480	-	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.92	Ta.28142.2.S1_at	CA644586	-	-	3e-1	At5g47700	60S acidic ribosomal protein P1 (RPP1C)	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.91	TaAffx.28146.1.S1_at	CA664568	-	-	2e+1	At3g12345	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.93	Ta.974.2.S1_at	CA747351	-	-	5e+0	At3g28956	catalytic/ nucleotide binding	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.90	Ta.5287.1.S1_at	CD879542	-	-	5e-3	At2g07640	D2,D4-dienoyl-CoA reductase-related	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.92	Ta.28190.2.S1_a_at	CA654134	-	-	7e-2	At5g07620	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.91	Ta.11430.1.S1_at	CA637362	-	-	4e+0	At4g39860	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.93	TaAffx.80253.1.S1_at	CA699306	-	-	3e-1	At5g05140	transcription elongation factor-related	O.I.	H.G.	S.X.	Please select
0.28	39.2	0.93	Ta.9049.2.A1_at	CA606630	-	-	3e-1	At2g19480	NAP1	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.92	Ta.23792.2.A1_at	CA722512	-	-	3e-6	At4g32040	KNAT5 (KNOTTED1-LIKE HOMEOBOX GENE 5)	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.93	TaAffx.23270.2.A1_at	CA664368	-	-	2e+1	At5g22608	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.92	Ta.11134.2.S1_at	CA607725	-	-	1e+0	At1g23770	F-box family protein	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.91	TaAffx.78543.1.S1_at	CA731131	-	-	1e-3	At5g59210	myosin heavy chain-related	O.I.	H.G.	S.X.	Please select
0.19	22.4	0.92	TaAffx.84346.1.S1_at	CA638937	-	-	2e-2	At3g59060	PIL6 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 6)	O.I.	H.G.	S.X.	Please select
0.18	21.0	0.92	TaAffx.108544.2.S1_x_at	CA687168	-	-	3e+0	At5g14730	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.93	Ta.1951.2.A1_at	CA681231	-	-	2e+1	At5g55000	FIP2	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.92	TaAffx.50694.1.S1_at	CA736877	-	-	2e+0	At3g07590	small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative	O.I.	H.G.	S.X.	Please select
0.15	17.1	0.91	Ta.28386.2.S1_s_at	CA735686	-	-	8e-1	At5g64180	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.9	99.3	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
9.0	99.0	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
8.6	98.9	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
6.1	98.1	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
4.5	96.9	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.2	96.6	GSM314256	tissue type: germinating seed, root - rep3	GSE12508	Transcription patterns during wheat development
4.1	96.4	GSM298090	Leaf tissue of Solstice at 5 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.0	96.3	GSM314255	tissue type: germinating seed, root - rep2	GSE12508	Transcription patterns during wheat development
3.6	95.6	GSM314259	tissue type: germinating seed, embryo - rep3	GSE12508	Transcription patterns during wheat development
3.3	95.0	GSM314258	tissue type: germinating seed, embryo - rep2	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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