Co-expression analysis

Gene ID TaAffx.83397.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At4g24805: methyltransferase (HF=9e+0)
Module size 22 genes
NF 0.46
%ile 71.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.96TaAffx.83397.1.S1_atCA658049--9e+0At4g24805methyltransferaseO.I.H.G.S.X.
0.8393.40.97TaAffx.78678.1.S1_atCA729105--4e+0At1g66820glycine-rich proteinO.I.H.G.S.X.
0.6182.00.97Ta.10630.2.A1_atCA696219--4e-3At3g06750hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.5979.80.98Ta.9718.2.S1_atCA737941--2e-31At1g29910CAB3 (CHLOROPHYLL A/B BINDING PROTEIN 3)O.I.H.G.S.X.
0.5979.80.98TaAffx.128506.3.A1_atCA678081--8e-14At1g29920CAB2 (CHLOROPHYLL A/B-BINDING PROTEIN 2)O.I.H.G.S.X.
0.5879.20.97TaAffx.26876.1.S1_atCA683776--4e+0At3g25580thioredoxin-relatedO.I.H.G.S.X.
0.5779.20.98TaAffx.128712.19.S1_s_atCA672849Photosystem II CP43 chlorophyll apoprotein-2e+0At4g09649unknown proteinO.I.H.G.S.X.
0.5779.20.98Ta.9718.2.S1_x_atCA737941--2e-31At1g29910CAB3 (CHLOROPHYLL A/B BINDING PROTEIN 3)O.I.H.G.S.X.
0.5173.00.96Ta.5109.3.S1_atCA697843Plasma membrane H+-ATPase subunit H-9e-6At4g26710ATP synthase subunit H family proteinO.I.H.G.S.X.
0.5072.40.99Ta.30727.1.A1_atCK211113--1e-39At5g01530chlorophyll A-B binding protein CP29 (LHCB4)O.I.H.G.S.X.
0.4869.00.99Ta.27751.4.A1_x_atCK211705--3e-28At1g29930CAB1 (CHLOROPHYLL A/B BINDING PROTEIN 1)O.I.H.G.S.X.
0.4767.90.98TaAffx.109264.1.S1_atCA677790--1e+0At5g05090myb family transcription factorO.I.H.G.S.X.
0.4767.90.98Ta.27508.1.A1_atCA703452--7e-38At1g73590PIN1 (PIN-FORMED 1)O.I.H.G.S.X.
0.4666.80.98TaAffx.4530.1.S1_atCA742275--3e-128Atcg00120-O.I.H.G.S.X.
0.4464.50.97TaAffx.78289.1.S1_atCA734850--2e-17At1g07920elongation factor 1-alpha / EF-1-alphaO.I.H.G.S.X.
0.4464.50.98TaAffx.109850.2.S1_atCA667804--2e+0At3g12930-O.I.H.G.S.X.
0.4159.60.98Ta.24123.3.S1_atCA734877--3e-1At1g12244DNA binding / hydrolase, acting on ester bonds / nuclease/ nucleic acid binding / recombinaseO.I.H.G.S.X.
0.3854.70.98Ta.28714.1.A1_s_atCK211498Thiol-specific antioxidant protein-3e-77At3g116302-cys peroxiredoxin, chloroplast (BAS1)O.I.H.G.S.X.
0.3244.40.99TaAffx.107567.4.S1_atCA697924--3e-7Atcg00710-O.I.H.G.S.X.
0.3040.90.97TaAffx.28455.1.S1_atCA659945--6e-141Atcg00270-O.I.H.G.S.X.
0.2839.20.97TaAffx.107470.1.S1_atCA699346--1e-18Atcg00730-O.I.H.G.S.X.
0.2839.20.96Ta.28798.2.A1_s_atCA692737--4e-3At2g45070SEC61 BETAO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
32.199.9GSM315203target strand labeled: Antisense - rep1GSE12528Wheat "Chinese Spring" natural antisense transcription surveyLink to GEO
9.099.0GSM324488Si- B+ rep2GSE12936Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildewLink to GEO
9.099.0GSM324487Si- B+ rep1GSE12936Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildewLink to GEO
4.897.2GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.496.8GSM143515Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 1GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
4.296.6GSM314255tissue type: germinating seed, root - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
4.096.3GSM143517Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 3GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
4.096.3GSM314261tissue type: seedling, root - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
3.695.6GSM314256tissue type: germinating seed, root - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
3.595.4GSM314254tissue type: germinating seed, root - rep1GSE12508Transcription patterns during wheat developmentLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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