CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID TaAffx.82957.1.S1_at

Gene name
Homology with Arabidopsis Similar to At3g01990: ACR6 (HF=7e-2)

Module size 34 genes

NF 0.32

%ile 51.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.87 94.2 0.91 TaAffx.82957.1.S1_at CA664385 - - 7e-2 At3g01990 ACR6 O.I. H.G. S.X.
0.63 83.1 0.95 TaAffx.97951.1.S1_at CA485362 - - 4e-10 At5g13410 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein O.I. H.G. S.X.
0.59 79.8 0.96 Ta.4991.1.S1_a_at CK215951 - - 6e-1 At2g15740 zinc finger (C2H2 type) family protein O.I. H.G. S.X.
0.58 79.2 0.95 Ta.4922.2.S1_at BJ268998 - - 7e-2 At3g61080 fructosamine kinase family protein O.I. H.G. S.X.
0.54 75.5 0.96 Ta.4991.1.S1_x_at CK215951 - - 6e-1 At2g15740 zinc finger (C2H2 type) family protein O.I. H.G. S.X.
0.52 73.7 0.96 Ta.10085.1.S1_x_at BQ171616 - - 2e-1 At3g13740 URF 4-related O.I. H.G. S.X.
0.49 69.7 0.95 Ta.4991.3.S1_at CA626830 - - 1e+0 At5g60330 unknown protein O.I. H.G. S.X.
0.47 67.9 0.96 Ta.12206.1.S1_at CK151735 - - 6e-13 At1g73060 unknown protein O.I. H.G. S.X.
0.47 67.9 0.96 Ta.4991.1.S1_at CK215951 - - 6e-1 At2g15740 zinc finger (C2H2 type) family protein O.I. H.G. S.X.
0.45 65.2 0.95 Ta.6356.2.S1_at BJ258619 - - 2e-25 At4g34830 - O.I. H.G. S.X.
0.45 65.2 0.93 TaAffx.82888.1.S1_at CA662336 - - 4e-1 At5g37640 UBQ9 O.I. H.G. S.X.
0.44 64.5 0.96 TaAffx.106597.1.S1_at BJ211813 - - 1e+0 At3g58120 BZIP61 O.I. H.G. S.X.
0.44 64.5 0.96 Ta.4991.3.S1_x_at CA626830 - - 1e+0 At5g60330 unknown protein O.I. H.G. S.X.
0.42 60.9 0.95 Ta.29329.1.S1_at CD874029 - - 5e-6 At1g17650 GLYR2 (GLYOXYLATE REDUCTASE 2) O.I. H.G. S.X.
0.42 60.9 0.95 TaAffx.32198.1.S1_at CA599280 - - 4e+0 At5g53490 thylakoid lumenal 17.4 kDa protein, chloroplast O.I. H.G. S.X.
0.37 53.0 0.96 Ta.9139.2.S1_at CA636063 - - 1e-48 At2g18710 SCY1 (SecY Homolog 1) O.I. H.G. S.X.
0.37 53.0 0.95 Ta.22426.3.S1_at CA622182 - - 4e+0 At3g59600 NRPB8B O.I. H.G. S.X.
0.36 51.9 0.96 Ta.12206.2.S1_at CA616979 - - 5e-1 At5g55750 hydroxyproline-rich glycoprotein family protein O.I. H.G. S.X.
0.32 44.4 0.94 Ta.2381.3.S1_x_at CA715238 - - 3e+0 At1g61200 homeobox-leucine zipper protein-related O.I. H.G. S.X.
0.31 42.7 0.96 Ta.2431.2.S1_x_at BG905681 - - 2e+1 At5g14970 unknown protein O.I. H.G. S.X.
0.31 42.7 0.96 TaAffx.13595.3.S1_at CA743661 - - 7e+0 At3g02980 GCN5-related N-acetyltransferase (GNAT) family protein O.I. H.G. S.X.
0.30 40.9 0.95 TaAffx.121177.1.S1_at CA732736 - - 3e-11 At2g30390 FC2 (FERROCHELATASE 2) O.I. H.G. S.X.
0.28 39.2 0.94 TaAffx.84638.1.S1_x_at CA632541 - - 7e-2 At3g13227 serine-rich protein-related O.I. H.G. S.X.
0.28 39.2 0.96 TaAffx.59616.1.S1_x_at CA597989 - - 1e+1 At5g47700 60S acidic ribosomal protein P1 (RPP1C) O.I. H.G. S.X.
0.25 32.1 0.97 Ta.12375.1.A1_s_at BQ172208 - - 1e-7 At1g32070 ATNSI (NUCLEAR SHUTTLE INTERACTING) O.I. H.G. S.X.
0.22 27.1 0.93 TaAffx.113828.1.S1_at CA604282 - - 3e-1 At2g05330 speckle-type POZ protein-related O.I. H.G. S.X.
0.22 27.1 0.96 Ta.27864.1.S1_at CD880477 - - 7e-15 At3g10060 immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative O.I. H.G. S.X.
0.22 27.1 0.96 Ta.7763.1.S1_at CA681423 - - 6e-7 At4g29590 methyltransferase O.I. H.G. S.X.
0.22 27.1 0.96 Ta.23665.1.S1_at X14348.1 ADP-glucose pyrophosophorylase - 4e-23 At5g19220 APL1 (ADP GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 1) O.I. H.G. S.X.
0.19 22.4 0.96 Ta.28818.1.S1_at CA618617 - - 6e-1 Atcg00670 - O.I. H.G. S.X.
0.15 17.1 0.95 Ta.2431.1.S1_x_at BG905732 - - 4e-5 At3g48420 haloacid dehalogenase-like hydrolase family protein O.I. H.G. S.X.
0.15 17.1 0.93 TaAffx.112042.1.S1_at CA687270 - - 1e-3 At3g10405 unknown protein O.I. H.G. S.X.
0.14 15.8 0.95 Ta.9510.1.S1_x_at BJ254552 - - 2e+0 At4g25570 ACYB-2 O.I. H.G. S.X.
0.12 13.3 0.95 Ta.23163.1.A1_at CK216129 - - 3e-1 At1g06770 DRIP1 (DREB2A-INTERACTING PROTEIN 1) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.87	94.2	0.91	TaAffx.82957.1.S1_at	CA664385	-	-	7e-2	At3g01990	ACR6	O.I.	H.G.	S.X.
0.63	83.1	0.95	TaAffx.97951.1.S1_at	CA485362	-	-	4e-10	At5g13410	immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein	O.I.	H.G.	S.X.
0.59	79.8	0.96	Ta.4991.1.S1_a_at	CK215951	-	-	6e-1	At2g15740	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.
0.58	79.2	0.95	Ta.4922.2.S1_at	BJ268998	-	-	7e-2	At3g61080	fructosamine kinase family protein	O.I.	H.G.	S.X.
0.54	75.5	0.96	Ta.4991.1.S1_x_at	CK215951	-	-	6e-1	At2g15740	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.
0.52	73.7	0.96	Ta.10085.1.S1_x_at	BQ171616	-	-	2e-1	At3g13740	URF 4-related	O.I.	H.G.	S.X.
0.49	69.7	0.95	Ta.4991.3.S1_at	CA626830	-	-	1e+0	At5g60330	unknown protein	O.I.	H.G.	S.X.
0.47	67.9	0.96	Ta.12206.1.S1_at	CK151735	-	-	6e-13	At1g73060	unknown protein	O.I.	H.G.	S.X.
0.47	67.9	0.96	Ta.4991.1.S1_at	CK215951	-	-	6e-1	At2g15740	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.
0.45	65.2	0.95	Ta.6356.2.S1_at	BJ258619	-	-	2e-25	At4g34830	-	O.I.	H.G.	S.X.
0.45	65.2	0.93	TaAffx.82888.1.S1_at	CA662336	-	-	4e-1	At5g37640	UBQ9	O.I.	H.G.	S.X.
0.44	64.5	0.96	TaAffx.106597.1.S1_at	BJ211813	-	-	1e+0	At3g58120	BZIP61	O.I.	H.G.	S.X.
0.44	64.5	0.96	Ta.4991.3.S1_x_at	CA626830	-	-	1e+0	At5g60330	unknown protein	O.I.	H.G.	S.X.
0.42	60.9	0.95	Ta.29329.1.S1_at	CD874029	-	-	5e-6	At1g17650	GLYR2 (GLYOXYLATE REDUCTASE 2)	O.I.	H.G.	S.X.
0.42	60.9	0.95	TaAffx.32198.1.S1_at	CA599280	-	-	4e+0	At5g53490	thylakoid lumenal 17.4 kDa protein, chloroplast	O.I.	H.G.	S.X.
0.37	53.0	0.96	Ta.9139.2.S1_at	CA636063	-	-	1e-48	At2g18710	SCY1 (SecY Homolog 1)	O.I.	H.G.	S.X.
0.37	53.0	0.95	Ta.22426.3.S1_at	CA622182	-	-	4e+0	At3g59600	NRPB8B	O.I.	H.G.	S.X.
0.36	51.9	0.96	Ta.12206.2.S1_at	CA616979	-	-	5e-1	At5g55750	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.
0.32	44.4	0.94	Ta.2381.3.S1_x_at	CA715238	-	-	3e+0	At1g61200	homeobox-leucine zipper protein-related	O.I.	H.G.	S.X.
0.31	42.7	0.96	Ta.2431.2.S1_x_at	BG905681	-	-	2e+1	At5g14970	unknown protein	O.I.	H.G.	S.X.
0.31	42.7	0.96	TaAffx.13595.3.S1_at	CA743661	-	-	7e+0	At3g02980	GCN5-related N-acetyltransferase (GNAT) family protein	O.I.	H.G.	S.X.
0.30	40.9	0.95	TaAffx.121177.1.S1_at	CA732736	-	-	3e-11	At2g30390	FC2 (FERROCHELATASE 2)	O.I.	H.G.	S.X.
0.28	39.2	0.94	TaAffx.84638.1.S1_x_at	CA632541	-	-	7e-2	At3g13227	serine-rich protein-related	O.I.	H.G.	S.X.
0.28	39.2	0.96	TaAffx.59616.1.S1_x_at	CA597989	-	-	1e+1	At5g47700	60S acidic ribosomal protein P1 (RPP1C)	O.I.	H.G.	S.X.
0.25	32.1	0.97	Ta.12375.1.A1_s_at	BQ172208	-	-	1e-7	At1g32070	ATNSI (NUCLEAR SHUTTLE INTERACTING)	O.I.	H.G.	S.X.
0.22	27.1	0.93	TaAffx.113828.1.S1_at	CA604282	-	-	3e-1	At2g05330	speckle-type POZ protein-related	O.I.	H.G.	S.X.
0.22	27.1	0.96	Ta.27864.1.S1_at	CD880477	-	-	7e-15	At3g10060	immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative	O.I.	H.G.	S.X.
0.22	27.1	0.96	Ta.7763.1.S1_at	CA681423	-	-	6e-7	At4g29590	methyltransferase	O.I.	H.G.	S.X.
0.22	27.1	0.96	Ta.23665.1.S1_at	X14348.1	ADP-glucose pyrophosophorylase	-	4e-23	At5g19220	APL1 (ADP GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 1)	O.I.	H.G.	S.X.
0.19	22.4	0.96	Ta.28818.1.S1_at	CA618617	-	-	6e-1	Atcg00670	-	O.I.	H.G.	S.X.
0.15	17.1	0.95	Ta.2431.1.S1_x_at	BG905732	-	-	4e-5	At3g48420	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.
0.15	17.1	0.93	TaAffx.112042.1.S1_at	CA687270	-	-	1e-3	At3g10405	unknown protein	O.I.	H.G.	S.X.
0.14	15.8	0.95	Ta.9510.1.S1_x_at	BJ254552	-	-	2e+0	At4g25570	ACYB-2	O.I.	H.G.	S.X.
0.12	13.3	0.95	Ta.23163.1.A1_at	CK216129	-	-	3e-1	At1g06770	DRIP1 (DREB2A-INTERACTING PROTEIN 1)	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.7 98.7 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.2 98.5 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.0 98.5 GSM315203 target strand labeled: Antisense - rep1 GSE12528 Wheat "Chinese Spring" natural antisense transcription survey
6.9 98.4 GSM250897 TcLr1_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.3 98.2 GSM250896 Tc_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.2 98.1 GSM250895 Tc_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.0 98.0 GSM250899 TcLr34_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.8 96.0 GSM324493 Si+ B+ rep1 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.6 95.6 GSM324489 Si- B+ rep3 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.5 95.4 GSM143526 Thatcher_Lr34 (susceptible), mock inoculated distal leaf, replication 3 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
7.7	98.7	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.2	98.5	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.0	98.5	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
6.9	98.4	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.3	98.2	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.2	98.1	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.0	98.0	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.8	96.0	GSM324493	Si+ B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.6	95.6	GSM324489	Si- B+ rep3	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.5	95.4	GSM143526	Thatcher_Lr34 (susceptible), mock inoculated distal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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Gene ID	TaAffx.82957.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g01990: ACR6 (HF=7e-2)
Module size	34 genes
NF	0.32
%ile	51.9

Co-expression analysis

Gene ID TaAffx.82957.1.S1_at Gene name Homology with ArabidopsisSimilar to At3g01990: ACR6 (HF=7e-2) Module size 34 genes NF 0.32 %ile 51.9

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaVitis_viniferaZea_mays

Gene ID TaAffx.82957.1.S1_at

Gene name
Homology with Arabidopsis Similar to At3g01990: ACR6 (HF=7e-2)

Module size 34 genes

NF 0.32

%ile 51.9

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays