Co-expression analysis

Gene ID	TaAffx.82753.2.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g07590: small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative (HF=6e-1)
Module size	6 genes
NF	0.43
%ile	68.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	86.3	0.91	TaAffx.82753.2.S1_at	CA667656	-	-	6e-1	At3g07590	small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.90	Ta.1630.2.S1_at	CA668027	-	-	2e+0	At3g14850	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.90	Ta.13841.2.A1_at	CA639514	-	-	4e+0	At2g18876	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.91	Ta.28879.3.S1_at	CA661256	-	-	3e-1	At5g35069	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.90	TaAffx.105396.1.S1_s_at	CA734994	-	-	3e+0	At4g20440	smB (small nuclear ribonucleoprotein associated protein B)	O.I.	H.G.	S.X.	Please select
0.24	30.3	0.90	TaAffx.109083.1.S1_at	CA680397	-	-	4e-1	At5g43150	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.9	99.4	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
11.1	99.3	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.7	98.7	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.3	98.6	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
6.4	98.2	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.1	98.1	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.1	97.5	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
4.5	96.9	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.4	95.2	GSM315202	target strand labeled: Sense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
3.3	95.0	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the poplar gene, Ptp.7820.1.S1_at, orthologous to the query gene, TaAffx.82753.2.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.90	97.9	Ptp.7820.1.S1_at	At3g07590	-	-	4e-12	At5g07450	CYCP4	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.41	67.7	PtpAffx.222154.1.S1_at	At3g07590	hypothetical protein	-	1e+0	At3g29370	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	Ptp.3171.1.S1_a_at	At3g07590	hypothetical protein	-	3e-7	At3g62880	ATOEP16-4	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	PtpAffx.214361.1.S1_x_at	At3g07590	hypothetical protein	-	1e-76	At2g19950	GC1 (Golgin Candidate 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	Ptp.2345.1.S1_at	At3g07590	hypothetical protein	-	8e-12	At2g38710	AMMECR1 family	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	Ptp.4952.1.S1_at	At3g07590	hypothetical protein	-	4e-89	At1g59900	AT-E1 ALPHA	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	PtpAffx.7623.1.A1_at	At3g07590	hypothetical protein	-	2e-2	At3g48800	sterile alpha motif (SAM) domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	PtpAffx.21035.2.S1_a_at	At3g07590	hypothetical protein	-	1e-96	At5g10840	endomembrane protein 70, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	PtpAffx.5274.1.A1_s_at	At3g07590	hypothetical protein	-	1e-1	At2g40410	Ca(2+)-dependent nuclease, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	PtpAffx.138813.1.A1_s_at	At3g07590	hypothetical protein	-	3e-104	At1g09430	ACLA-3	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	Ptp.1997.1.S1_x_at	At3g07590	hypothetical protein	-	2e-12	At1g54580	ACP2 (ACYL CARRIER PROTEIN 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	PtpAffx.206458.1.S1_at	At3g07590	hypothetical protein	-	6e-1	At2g25840	OVA4 (ovule abortion 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	PtpAffx.38086.1.A1_s_at	At3g07590	hypothetical protein	-	2e-1	At1g24120	ARL1 (ARG1-LIKE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	PtpAffx.19120.1.A1_at	At3g07590	hypothetical protein	-	4e-5	At5g11640	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	PtpAffx.18251.2.A1_a_at	At3g07590	hypothetical protein	-	7e-18	At2g26300	GP ALPHA 1 (G PROTEIN ALPHA SUBUNIT 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	Ptp.3524.1.S1_at	At3g07590	hypothetical protein	-	2e-3	At4g32850	nPAP (NUCLEAR POLY(A) POLYMERASE)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.08	12.9	PtpAffx.206399.1.S1_s_at	At3g07590	NAC domain protein, IPR003441 /// NAC domain protein, IPR003441	-	7e-11	At5g56620	anac099 (Arabidopsis NAC domain containing protein 99)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.06	9.8	Ptp.4400.1.S1_at	At3g07590	hypothetical protein	-	5e-43	At3g62790	NADH-ubiquinone oxidoreductase-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Vitis_vinifera

Zea_mays

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