Co-expression analysis

Gene ID	TaAffx.80668.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g47700: 60S acidic ribosomal protein P1 (RPP1C) (HF=1e+0)
Module size	6 genes
NF	0.46
%ile	71.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.94	TaAffx.80668.1.S1_at	CA694164	-	-	1e+0	At5g47700	60S acidic ribosomal protein P1 (RPP1C)	O.I.	H.G.	S.X.	Please select
0.55	76.8	0.94	TaAffx.108775.1.S1_at	CA684251	-	-	3e+0	At5g47570	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.94	TaAffx.99206.1.S1_at	CA727631	-	-	3e-1	At4g21610	LOL2 (LSD ONE LIKE 2)	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.95	Ta.25522.2.S1_x_at	CA683586	-	-	2e-1	At4g13560	UNE15 (unfertilized embryo sac 15)	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.95	TaAffx.113756.1.S1_at	CA605644	-	-	1e-3	At5g04250	OTU-like cysteine protease family protein	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.94	TaAffx.5521.1.S1_at	CA708179	-	-	3e+0	At1g13960	WRKY4	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.4	98.6	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
7.1	98.5	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
6.7	98.4	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.5	98.3	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.3	97.6	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.2	97.5	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.7	95.8	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.6	95.6	GSM250914	Tc_7dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.4	95.2	GSM143515	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.3	95.0	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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