Co-expression analysis

Gene ID TaAffx.80611.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At4g08230: glycine-rich protein (HF=1e+0)
Module size 6 genes
NF 0.02
%ile 6.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.86TaAffx.80611.1.S1_atCA694763--1e+0At4g08230glycine-rich proteinO.I.H.G.S.X.
0.067.60.91TaAffx.64252.1.A1_atBJ308220--3e+0At5g22520unknown proteinO.I.H.G.S.X.
0.045.80.93Ta.3478.3.S1_x_atCA637826--2e-11At1g69670CUL3B (CULLIN 3B)O.I.H.G.S.X.
0.023.60.95Ta.11821.1.S1_a_atBQ170870--1e+0At3g52740unknown proteinO.I.H.G.S.X.
0.012.40.95Ta.12999.1.S1_atBQ281770--2e+0At4g37970CAD6 (CINNAMYL ALCOHOL DEHYDROGENASE 6)O.I.H.G.S.X.
0.012.40.95TaAffx.4157.1.S1_atCA608260--4e-3At1g17160pfkB-type carbohydrate kinase family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.999.3GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
7.098.5GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
6.898.4GSM143520Thatcher_Lr34 (susceptible), rust inoculated distal leaf, replication 3GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
4.196.4GSM111179genotype DH95 developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
3.695.6GSM143522Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 2GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
3.695.6GSM246395SB69_Stem_ rep2_at anthesisGSE9767Genotypic differences in water soluble carbohydrate metabolism in stemLink to GEO
3.595.4GSM143519Thatcher_Lr34 (susceptible), rust inoculated distal leaf, replication 2GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
3.495.2GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.395.0GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.294.8GSM143526Thatcher_Lr34 (susceptible), mock inoculated distal leaf, replication 3GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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