Co-expression analysis

Gene ID	TaAffx.80013.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At4g18335: unknown protein (HF=1e+0)
Module size	6 genes
NF	0.20
%ile	34.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.37	53.0	0.94	TaAffx.80013.1.S1_at	CA704301	-	-	1e+0	At4g18335	unknown protein	O.I.	H.G.	S.X.	Please select
0.80	92.2	0.95	TaAffx.56155.1.S1_at	CA656564	-	-	1e+1	At5g26070	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.61	82.0	0.95	TaAffx.64591.1.S1_at	BJ288225	-	-	1e+0	At1g19010	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.95	Ta.3203.2.S1_x_at	CA621738	-	-	5e-6	At1g27530	-	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.95	TaAffx.30673.1.S1_at	CA623010	-	-	7e-11	At4g25630	FIB2 (FIBRILLARIN 2)	O.I.	H.G.	S.X.	Please select
0.04	5.8	0.95	TaAffx.38158.4.S1_x_at	CA630021	-	-	1e-3	At2g44330	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.2	99.4	GSM298069	Leaf tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
6.8	98.4	GSM298071	Crown tissue of Paragon at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
6.8	98.4	GSM111210	genotype B11 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
6.2	98.1	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
6.0	98.0	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.8	97.2	GSM138193	genotype B33 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
4.6	97.0	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.3	96.7	GSM298083	Crown tissue of Solstice at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.1	96.4	GSM314269	tissue type: immature inflorescence - rep1	GSE12508	Transcription patterns during wheat development
4.1	96.4	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the grape gene, 1613673_at, orthologous to the query gene, TaAffx.80013.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	89.5	1613673_at	At4g18335	hypothetical protein LOC100255721	-	3e-10	At5g09620	octicosapeptide/Phox/Bem1p (PB1) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	1616863_at	At4g18335	hypothetical protein LOC100259827	-	2e-11	At2g16400	BLH7 (bell1-like homeodomain 7)	O.I.	H.G.	S.X.	Please select
0.50	72.7	1609339_at	At4g18335	hypothetical protein LOC100249314	-	5e-12	At4g14900	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.38	53.6	1620920_at	At4g18335	hypothetical protein LOC100245710	-	6e-5	At1g70950	-	O.I.	H.G.	S.X.	Please select
0.33	45.7	1613234_at	At4g18335	hypothetical protein LOC100246461	-	4e+0	At5g57650	eukaryotic translation initiation factor-related	O.I.	H.G.	S.X.	Please select
0.25	30.5	1619838_at	At4g18335	-	-	2e+0	At3g21170	F-box family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage