Co-expression analysis

Gene ID TaAffx.79900.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At2g19850: - (HF=8e-1)
Module size 6 genes
NF 0.01
%ile 1.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.63TaAffx.79900.1.S1_atCA706502--8e-1At2g19850-O.I.H.G.S.X.
0.012.40.91TaAffx.29433.1.S1_atBJ254389--2e+0At2g33120SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1)O.I.H.G.S.X.
0.012.40.91TaAffx.48650.1.S1_atBJ250244--4e-2At4g27300S-locus protein kinase, putativeO.I.H.G.S.X.
-0.70.92TaAffx.123483.1.S1_atCA709591--3e-2At1g62333unknown proteinO.I.H.G.S.X.
-0.70.91Ta.1905.3.S1_x_atBJ282136--2e-2At5g06460ATUBA2O.I.H.G.S.X.
-0.70.91Ta.1078.2.S1_a_atBJ252383Cyclophilin-8e-6At4g38740ROC1 (ROTAMASE CYP 1)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.099.1GSM250914Tc_7dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.897.9GSM250902Tc_7dpi_inoculated_rep1GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.797.9GSM250908Tc_7dpi_inoculated_rep2GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.697.8GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.097.4GSM143508Thatcher_Lr34 (resistant), mock inoculated basal leaf, replication 1GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
3.795.8GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.495.2GSM314270tissue type: immature inflorescence - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
2.994.0GSM143509Thatcher_Lr34 (resistant), mock inoculated basal leaf, replication 2GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
2.793.3GSM138147genotype G13 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
2.692.9GSM324488Si- B+ rep2GSE12936Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildewLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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