Co-expression analysis

Gene ID	TaAffx.79900.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g19850: - (HF=8e-1)
Module size	6 genes
NF	0.01
%ile	1.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.63	TaAffx.79900.1.S1_at	CA706502	-	-	8e-1	At2g19850	-	O.I.	H.G.	S.X.	Please select
0.01	2.4	0.91	TaAffx.29433.1.S1_at	BJ254389	-	-	2e+0	At2g33120	SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.01	2.4	0.91	TaAffx.48650.1.S1_at	BJ250244	-	-	4e-2	At4g27300	S-locus protein kinase, putative	O.I.	H.G.	S.X.	Please select
-	0.7	0.92	TaAffx.123483.1.S1_at	CA709591	-	-	3e-2	At1g62333	unknown protein	O.I.	H.G.	S.X.	Please select
-	0.7	0.91	Ta.1905.3.S1_x_at	BJ282136	-	-	2e-2	At5g06460	ATUBA2	O.I.	H.G.	S.X.	Please select
-	0.7	0.91	Ta.1078.2.S1_a_at	BJ252383	Cyclophilin	-	8e-6	At4g38740	ROC1 (ROTAMASE CYP 1)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.0	99.1	GSM250914	Tc_7dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.8	97.9	GSM250902	Tc_7dpi_inoculated_rep1	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.7	97.9	GSM250908	Tc_7dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.6	97.8	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
5.0	97.4	GSM143508	Thatcher_Lr34 (resistant), mock inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.7	95.8	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.4	95.2	GSM314270	tissue type: immature inflorescence - rep2	GSE12508	Transcription patterns during wheat development
2.9	94.0	GSM143509	Thatcher_Lr34 (resistant), mock inoculated basal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
2.7	93.3	GSM138147	genotype G13 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.6	92.9	GSM324488	Si- B+ rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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