CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID TaAffx.79624.1.S1_at

Gene name
Homology with Arabidopsis Similar to At1g56160: MYB72 (MYB DOMAIN PROTEIN 72) (HF=9e-1)

Module size 16 genes

NF 0.32

%ile 51.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.60 81.0 0.85 TaAffx.79624.1.S1_at CA711640 - - 9e-1 At1g56160 MYB72 (MYB DOMAIN PROTEIN 72) O.I. H.G. S.X.
0.52 73.7 0.91 Ta.8435.2.S1_at CA698166 - - 4e+0 At5g13190 - O.I. H.G. S.X.
0.46 66.8 0.91 TaAffx.110830.1.S1_at CA653547 - - 8e-2 At2g20613 unknown protein O.I. H.G. S.X.
0.44 64.5 0.93 Ta.6163.3.S1_at CA709133 - - 3e-1 At1g78410 VQ motif-containing protein O.I. H.G. S.X.
0.38 54.7 0.88 TaAffx.113236.1.S1_at CA626069 - - 6e-30 At3g43810 CAM7 (CALMODULIN 7) O.I. H.G. S.X.
0.35 49.8 0.90 TaAffx.111160.1.S1_at CA646902 - - 6e-1 At2g40880 ATCYSA (CYSTATIN A) O.I. H.G. S.X.
0.35 49.8 0.91 Ta.17843.2.S1_x_at CA624206 - - 4e+0 At5g06690 WCRKC1 (WCRKC THIOREDOXIN 1) O.I. H.G. S.X.
0.33 46.9 0.93 TaAffx.5141.1.S1_at CA720838 - - 2e-1 At5g54430 universal stress protein (USP) family protein O.I. H.G. S.X.
0.32 44.4 0.93 TaAffx.56566.1.S1_at CA648967 - - 2e-1 At3g59340 unknown protein O.I. H.G. S.X.
0.30 40.9 0.93 TaAffx.48523.1.S1_x_at CA646794 - - 3e+1 At5g50345 - O.I. H.G. S.X.
0.23 29.0 0.94 TaAffx.25689.1.S1_at CA697006 - - 4e+0 At3g57560 aspartate/glutamate/uridylate kinase family protein O.I. H.G. S.X.
0.23 29.0 0.93 TaAffx.5141.1.S1_x_at CA720838 - - 2e-1 At5g54430 universal stress protein (USP) family protein O.I. H.G. S.X.
0.19 22.4 0.90 TaAffx.108979.1.S1_at CA681631 - - 3e-1 At5g03455 CDC25 O.I. H.G. S.X.
0.15 17.1 0.91 TaAffx.31744.1.S1_at CA608789 - - 8e-1 At2g26500 cytochrome b6f complex subunit (petM), putative O.I. H.G. S.X.
0.14 15.8 0.92 Ta.17287.1.S1_at CA619357 - - 4e-3 At4g24920 protein transport protein SEC61 gamma subunit, putative O.I. H.G. S.X.
0.12 13.3 0.91 TaAffx.78834.1.S1_x_at CA727217 - - 4e-3 At2g21330 fructose-bisphosphate aldolase, putative O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.7 99.1 GSM314260 tissue type: seedling, root - rep1 GSE12508 Transcription patterns during wheat development
8.3 98.8 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
8.2 98.8 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
7.8 98.7 GSM314262 tissue type: seedling, root - rep3 GSE12508 Transcription patterns during wheat development
7.4 98.6 GSM314261 tissue type: seedling, root - rep2 GSE12508 Transcription patterns during wheat development
7.2 98.5 GSM298067 Leaf tissue of Paragon at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
5.5 97.8 GSM298090 Leaf tissue of Solstice at 5 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
5.0 97.4 GSM138163 genotype E5 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
4.5 96.9 GSM138171 genotype C31 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
4.3 96.7 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage