Co-expression analysis

Gene ID TaAffx.79610.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At1g26762: unknown protein (HF=9e-1)
Module size 6 genes
NF 0.11
%ile 23.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8092.20.92TaAffx.79610.1.S1_atCA711937--9e-1At1g26762unknown proteinO.I.H.G.S.X.
0.6081.00.92TaAffx.51916.1.S1_atCA716507--3e+0At4g26010peroxidase, putativeO.I.H.G.S.X.
0.5072.40.91TaAffx.9551.1.S1_atCA595241--1e+0At2g36410unknown proteinO.I.H.G.S.X.
0.1415.80.93TaAffx.27409.1.S1_atCA677175--4e+0At1g02405proline-rich family proteinO.I.H.G.S.X.
0.1213.30.92Ta.28142.2.S1_atCA644586--3e-1At5g4770060S acidic ribosomal protein P1 (RPP1C)O.I.H.G.S.X.
0.034.70.91Ta.7193.2.S1_atBG904530--3e+0At2g34690ACD11 (ACCELERATED CELL DEATH 11)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.699.3GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
7.598.6GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
6.398.2GSM138162genotype E5 developing seed at 5 days after anthesis, biological rep1GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
5.097.4GSM111236genotype F38b developing seed at 5 days after anthesis, biological rep1GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
4.196.4GSM298078Leaf tissue of Solstice at 3 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.996.1GSM298064Crown tissue of Harnesk at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.294.8GSM250893TcLr34_3dpi_mock_rep2GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.294.8GSM298069Leaf tissue of Paragon at 9 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.194.5GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.194.5GSM298062Crown tissue of Harnesk at 5 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO

Inter-species module comparison

A co-expression module including the maize gene, ZmAffx.1077.1.A1_at, orthologous to the query gene, TaAffx.79610.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9199.0ZmAffx.1077.1.A1_atAt1g26762hypothetical protein LOC100274739-9e+0At5g23290PDF5 (PREFOLDIN 5)O.I.H.G.S.X.
0.083.4Zm.17309.1.A1_atAt1g26762--4e+0At5g64680unknown proteinO.I.H.G.S.X.
0.051.9Zm.7645.1.A1_atAt1g26762--5e+0At5g46300unknown proteinO.I.H.G.S.X.
0.041.5Zm.13966.2.A1_atAt1g26762--4e+0At4g29930basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.020.7ZmAffx.406.10.S1_atAt1g26762--1e+1At5g1432030S ribosomal protein S13, chloroplast (CS13)O.I.H.G.S.X.
0.010.3Zm.12483.1.A1_atAt1g26762hypothetical protein LOC100273621-5e+0At5g25540CID6 (CTC-Interacting Domain 6)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera



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