CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID TaAffx.79610.1.S1_at

Gene name
Homology with Arabidopsis Similar to At1g26762: unknown protein (HF=9e-1)

Module size 6 genes

NF 0.11

%ile 23.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 92.2 0.92 TaAffx.79610.1.S1_at CA711937 - - 9e-1 At1g26762 unknown protein O.I. H.G. S.X.
0.60 81.0 0.92 TaAffx.51916.1.S1_at CA716507 - - 3e+0 At4g26010 peroxidase, putative O.I. H.G. S.X.
0.50 72.4 0.91 TaAffx.9551.1.S1_at CA595241 - - 1e+0 At2g36410 unknown protein O.I. H.G. S.X.
0.14 15.8 0.93 TaAffx.27409.1.S1_at CA677175 - - 4e+0 At1g02405 proline-rich family protein O.I. H.G. S.X.
0.12 13.3 0.92 Ta.28142.2.S1_at CA644586 - - 3e-1 At5g47700 60S acidic ribosomal protein P1 (RPP1C) O.I. H.G. S.X.
0.03 4.7 0.91 Ta.7193.2.S1_at BG904530 - - 3e+0 At2g34690 ACD11 (ACCELERATED CELL DEATH 11) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.6 99.3 GSM298067 Leaf tissue of Paragon at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
7.5 98.6 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
6.3 98.2 GSM138162 genotype E5 developing seed at 5 days after anthesis, biological rep1 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
5.0 97.4 GSM111236 genotype F38b developing seed at 5 days after anthesis, biological rep1 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
4.1 96.4 GSM298078 Leaf tissue of Solstice at 3 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
3.9 96.1 GSM298064 Crown tissue of Harnesk at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
3.2 94.8 GSM250893 TcLr34_3dpi_mock_rep2 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.2 94.8 GSM298069 Leaf tissue of Paragon at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
3.1 94.5 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.1 94.5 GSM298062 Crown tissue of Harnesk at 5 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the soybean gene, PsAffx.CL1382Contig1_at, orthologous to the query gene, TaAffx.79610.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 71.7 PsAffx.CL1382Contig1_at At1g26762 - - 1e+0 At1g75860 unknown protein O.I. H.G. S.X.
0.74 89.2 PsAffx.C21000032_at At1g26762 - - 2e+0 At1g26840 ORC6 (ORIGIN RECOGNITION COMPLEX PROTEIN 6) O.I. H.G. S.X.
0.74 89.2 PsAffx.psMC003xD22f_s_at At1g26762 - - 3e+0 At5g22080 DNAJ heat shock N-terminal domain-containing protein O.I. H.G. S.X.
0.46 65.5 PsAffx.CL1570Contig1_at At1g26762 - - 5e-1 At3g24830 60S ribosomal protein L13A (RPL13aB) O.I. H.G. S.X.
0.44 63.3 PsAffx.C43000039_at At1g26762 - - 3e+0 At4g01590 unknown protein O.I. H.G. S.X.
0.40 57.1 PsAffx.C19000003_at At1g26762 - - 6e+0 At5g12140 ATCYS1 (A. thaliana cystatin-1) O.I. H.G. S.X.
0.38 53.3 PsAffx.C143000013_at At1g26762 - - 2e+0 At5g49800 - O.I. H.G. S.X.
0.31 42.2 PsAffx.psMA007xK15f_s_at At1g26762 - - 1e-1 At5g22870 harpin-induced protein-related / HIN1-related / harpin-responsive protein-related O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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