Co-expression analysis

Gene ID TaAffx.79437.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At1g02680: TAF13 (TBP-ASSOCIATED FACTOR 13) (HF=3e+0)
Module size 6 genes
NF 0.67
%ile 91.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8092.20.96TaAffx.79437.1.S1_atCA715704--3e+0At1g02680TAF13 (TBP-ASSOCIATED FACTOR 13)O.I.H.G.S.X.
0.8393.40.96TaAffx.4857.1.S1_atCA730111--4e+0At1g77682-O.I.H.G.S.X.
0.5576.80.96TaAffx.55653.1.S1_atCA663094--1e+1At4g20030RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.5576.80.97TaAffx.118620.1.S1_atBJ316617--1e+0At2g31560unknown proteinO.I.H.G.S.X.
0.5072.40.96TaAffx.73323.1.S1_atCA713945--3e+0At5g45870Bet v I allergen family proteinO.I.H.G.S.X.
0.5072.40.96TaAffx.3664.1.S1_atCD876496--2e+0At2g47710universal stress protein (USP) family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.199.0GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
8.999.0GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
6.798.4GSM298090Leaf tissue of Solstice at 5 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
6.098.0GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.397.6GSM315203target strand labeled: Antisense - rep1GSE12528Wheat "Chinese Spring" natural antisense transcription surveyLink to GEO
5.397.6GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.197.5GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.197.5GSM250897TcLr1_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.795.8GSM298093Crown tissue of Solstice at 5 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.795.8GSM143524Thatcher_Lr34 (susceptible), mock inoculated distal leaf, replication 1GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO

Inter-species module comparison

A co-expression module including the poplar gene, Ptp.2986.1.S1_at, orthologous to the query gene, TaAffx.79437.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9499.6Ptp.2986.1.S1_atAt1g02680--2e+0At1g75550glycine-rich proteinO.I.H.G.S.X.
0.2850.5PtpAffx.12079.1.S1_atAt1g02680hypothetical protein-1e-26At5g25170unknown proteinO.I.H.G.S.X.
0.2747.1PtpAffx.200667.1.S1_x_atAt1g02680hypothetical protein-4e-78At3g15730PLDALPHA1 (PHOSPHOLIPASE D ALPHA 1)O.I.H.G.S.X.
0.2747.1PtpAffx.45196.1.S1_atAt1g02680hypothetical protein-5e-9At4g28300hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.2340.5PtpAffx.4273.2.S1_a_atAt1g02680hypothetical protein-1e+0At4g28980cyclin-dependent kinase-activating kinase 1At / CDK-activating kinase 1At (CAK1)O.I.H.G.S.X.
0.2238.3PtpAffx.49746.1.A1_a_atAt1g02680hypothetical protein-4e-57At1g48790mov34 family proteinO.I.H.G.S.X.
0.1729.1Ptp.5534.1.A1_s_atAt1g02680hypothetical protein-2e-80At5g41700UBC8 (UBIQUITIN CONJUGATING ENZYME 8)O.I.H.G.S.X.
0.1626.9PtpAffx.66672.1.S1_atAt1g02680hypothetical protein-2e-6At2g40935unknown proteinO.I.H.G.S.X.
0.1525.3Ptp.31.2.S1_s_atAt1g02680hypothetical protein-2e-5At4g29340PRF4 (PROFILIN 4)O.I.H.G.S.X.
0.1525.3Ptp.1758.1.A1_atAt1g02680hypothetical protein-5e-50At1g60780HAP13 (HAPLESS 13)O.I.H.G.S.X.
0.1423.5PtpAffx.4431.7.S1_a_atAt1g02680hypothetical protein-7e-12At3g29100VTI13O.I.H.G.S.X.
0.1321.6PtpAffx.13438.1.S1_s_atAt1g02680hypothetical protein-2e-96At3g28715H+-transporting two-sector ATPase, putativeO.I.H.G.S.X.
0.1219.6PtpAffx.17445.2.S1_atAt1g02680hypothetical protein-9e-59At5g54680ILR3 (iaa-leucine resistant3)O.I.H.G.S.X.
0.1219.6PtpAffx.27644.1.S1_atAt1g02680hypothetical protein-3e-27At3g49720unknown proteinO.I.H.G.S.X.
0.1118.1PtpAffx.7210.2.A1_atAt1g02680hypothetical protein-1e-9At2g46260BTB/POZ domain-containing proteinO.I.H.G.S.X.
0.1118.1Ptp.247.1.A1_s_atAt1g02680hypothetical protein-2e-15At3g26370unknown proteinO.I.H.G.S.X.
0.0914.6PtpAffx.12507.2.S1_s_atAt1g02680hypothetical protein-7e-62At4g17730SYP23 (SYNTAXIN OF PLANTS 23)O.I.H.G.S.X.
0.0914.6PtpAffx.129732.1.S1_s_atAt1g02680hypothetical protein-2e+0At5g12030AT-HSP17.6A (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 17.6A)O.I.H.G.S.X.
0.0812.9Ptp.231.1.A1_s_atAt1g02680hypothetical protein-1e-10At2g20230-O.I.H.G.S.X.
0.0812.9PtpAffx.100467.1.S1_atAt1g02680hypothetical protein-8e-40At4g16144-O.I.H.G.S.X.
0.0812.9PtpAffx.213148.1.S1_atAt1g02680hypothetical protein-5e-11At4g12560F-box family proteinO.I.H.G.S.X.
0.0711.6PtpAffx.163957.1.S1_s_atAt1g02680hypothetical protein-1e-10At1g06130GLX2-4 (glyoxalase 2-4)O.I.H.G.S.X.
0.0711.6PtpAffx.39908.1.S1_atAt1g02680hypothetical protein-1e-87At1g69960PP2A (SERINE/THREONINE PROTEIN PHOSPHATASE 2A)O.I.H.G.S.X.
0.035.2PtpAffx.202997.1.S1_x_atAt1g02680hypothetical protein-6e-101At3g14270phosphatidylinositol-4-phosphate 5-kinase family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Vitis_vinifera
Zea_mays



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