Co-expression analysis

Gene ID TaAffx.79437.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At1g02680: TAF13 (TBP-ASSOCIATED FACTOR 13) (HF=3e+0)
Module size 6 genes
NF 0.67
%ile 91.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8092.20.96TaAffx.79437.1.S1_atCA715704--3e+0At1g02680TAF13 (TBP-ASSOCIATED FACTOR 13)O.I.H.G.S.X.
0.8393.40.96TaAffx.4857.1.S1_atCA730111--4e+0At1g77682-O.I.H.G.S.X.
0.5576.80.96TaAffx.55653.1.S1_atCA663094--1e+1At4g20030RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.5576.80.97TaAffx.118620.1.S1_atBJ316617--1e+0At2g31560unknown proteinO.I.H.G.S.X.
0.5072.40.96TaAffx.73323.1.S1_atCA713945--3e+0At5g45870Bet v I allergen family proteinO.I.H.G.S.X.
0.5072.40.96TaAffx.3664.1.S1_atCD876496--2e+0At2g47710universal stress protein (USP) family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.199.0GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
8.999.0GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
6.798.4GSM298090Leaf tissue of Solstice at 5 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
6.098.0GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.397.6GSM315203target strand labeled: Antisense - rep1GSE12528Wheat "Chinese Spring" natural antisense transcription surveyLink to GEO
5.397.6GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.197.5GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.197.5GSM250897TcLr1_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.795.8GSM298093Crown tissue of Solstice at 5 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.795.8GSM143524Thatcher_Lr34 (susceptible), mock inoculated distal leaf, replication 1GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO

Inter-species module comparison

A co-expression module including the barley gene, HV_CEb0004O15r2_s_at, orthologous to the query gene, TaAffx.79437.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9599.2HV_CEb0004O15r2_s_atAt1g02680--2e+0At4g24973-O.I.H.G.S.X.
0.3138.6HT10M15u_atAt1g02680--4e+0At1g55310SR33O.I.H.G.S.X.
0.2935.5HVSMEn0016L17r2_atAt1g02680--1e-3At1g20850XCP2 (xylem cysteine peptidase 2)O.I.H.G.S.X.
0.2935.5Contig17645_atAt1g02680--2e+0At3g56810unknown proteinO.I.H.G.S.X.
0.2630.4HVSMEg0005F03r2_atAt1g02680--9e-1At5g56050-O.I.H.G.S.X.
0.2528.9Contig19560_atAt1g02680--3e-1At2g47510FUM1 (FUMARASE 1)O.I.H.G.S.X.
0.2528.9Contig26511_atAt1g02680--2e+0At3g50880HhH-GPD base excision DNA repair family proteinO.I.H.G.S.X.
0.2122.6Contig5287_atAt1g02680--3e-1At5g41685mitochondrial import receptor subunit TOM7 / translocase of outer membrane 7 kDa subunit (TOM7.1)O.I.H.G.S.X.
0.2122.6HT11K17u_atAt1g02680--2e-1At1g24590DRNL (DORNROSCHEN-LIKE)O.I.H.G.S.X.
0.1919.6Contig11961_atAt1g02680--1e+0At5g55570unknown proteinO.I.H.G.S.X.
0.1919.6Contig21629_atAt1g02680--2e+0At3g15640cytochrome c oxidase family proteinO.I.H.G.S.X.
0.1818.2HVSMEg0010M24r2_s_atAt1g02680--8e-1At5g27020unknown proteinO.I.H.G.S.X.
0.1716.9HVSMEb0014K23r2_s_atAt1g02680--3e+0At2g05410ubiquitin-specific protease-related / meprin and TRAF homology (MATH) domain-containing protein-relatedO.I.H.G.S.X.
0.1716.9S0000800190F11F1_atAt1g02680--6e-8At2g3719060S ribosomal protein L12 (RPL12A)O.I.H.G.S.X.
0.1514.1HV08J24u_x_atAt1g02680--1e+0At2g35605SWIB complex BAF60b domain-containing proteinO.I.H.G.S.X.
0.1514.1Contig18779_atAt1g02680--5e+0At4g16930disease resistance protein (TIR-NBS-LRR class), putativeO.I.H.G.S.X.
0.1514.1Contig18290_atAt1g02680--1e+1At4g15953-O.I.H.G.S.X.
0.1412.9HT08O05u_atAt1g02680--7e-1At5g25450ubiquinol-cytochrome C reductase complex 14 kDa protein, putativeO.I.H.G.S.X.
0.097.4EBro02_SQ008_P15_atAt1g02680--1e+1At5g43211unknown proteinO.I.H.G.S.X.
0.097.4HVSMEa0012H02f2_atAt1g02680--4e+0At3g02555unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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