Co-expression analysis

Gene ID TaAffx.79383.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At1g49010: myb family transcription factor (HF=6e-2)
Module size 6 genes
NF 0.12
%ile 24.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.85TaAffx.79383.1.S1_atCA716967--6e-2At1g49010myb family transcription factorO.I.H.G.S.X.
0.6786.30.93Ta.893.1.S1_atY09013.1transcriptional activator-5e-2At2g28840ankyrin repeat family proteinO.I.H.G.S.X.
0.5072.40.97Ta.24532.1.A1_atBQ166611--2e+0At3g10330transcription initiation factor IIB-2 / general transcription factor TFIIB-2 (TFIIB2)O.I.H.G.S.X.
0.4464.50.95Ta.22501.2.S1_a_atCA648569--1e+0At3g58400meprin and TRAF homology domain-containing protein / MATH domain-containing proteinO.I.H.G.S.X.
0.3651.90.96Ta.10083.1.S1_atCD898484--1e+1At4g28150unknown proteinO.I.H.G.S.X.
0.045.80.86Ta.811.2.S1_a_atCA711021--4e+0At5g01712CPuORF48 (Conserved peptide upstream open reading frame 48)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
21.899.8GSM314288tissue type: 22 DAP endosperm - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
20.899.7GSM314289tissue type: 22 DAP endosperm - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
18.599.7GSM314287tissue type: 22 DAP endosperm - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
6.898.4GSM315203target strand labeled: Antisense - rep1GSE12528Wheat "Chinese Spring" natural antisense transcription surveyLink to GEO
5.998.0GSM143506Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 2GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
5.897.9GSM143502Thatcher_Lr34 (resistant), rust inoculated basal leaf, replication 1GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
5.297.5GSM143505Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 1GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
5.297.5GSM250894TcLr34_3dpi_inoculated_rep2GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.897.2GSM143507Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 3GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
4.296.6GSM143515Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 1GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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