Co-expression analysis

Gene ID	TaAffx.79368.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At4g18790: NRAMP5 (HF=3e+0)
Module size	10 genes
NF	0.34
%ile	55.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	83.1	0.83	TaAffx.79368.1.S1_at	CA717241	-	-	3e+0	At4g18790	NRAMP5	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.87	TaAffx.51811.1.S1_at	CA718648	-	-	1e+0	At1g19086	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.88	Ta.1203.1.S1_at	BE515598	-	-	3e-12	At2g19450	TAG1 (TRIACYLGLYCEROL BIOSYNTHESIS DEFECT 1)	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.88	Ta.5840.1.S1_at	BJ306840	-	-	2e-7	At4g12130	aminomethyltransferase	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.86	Ta.5978.2.A1_at	BE430231	-	-	2e-14	At4g33700	CBS domain-containing protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.88	Ta.10762.1.A1_at	BQ166486	-	-	5e+0	At3g30260	AGL79 (AGAMOUS-LIKE 79)	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.81	TaAffx.71198.1.S1_at	BE492319	-	-	9e-1	At5g56980	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.88	Ta.5999.1.S1_at	CA721660	-	-	5e-1	At5g23810	AAP7	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.88	TaAffx.37165.1.S1_at	BJ296677	-	-	2e+0	At5g57180	CIA2 (CHLOROPLAST IMPORT APPARATUS 2)	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.88	Ta.10754.1.S1_at	BQ166469	-	-	1e+0	At5g40980	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.6	99.2	GSM314289	tissue type: 22 DAP endosperm - rep3	GSE12508	Transcription patterns during wheat development
5.7	97.9	GSM314288	tissue type: 22 DAP endosperm - rep2	GSE12508	Transcription patterns during wheat development
5.2	97.5	GSM314284	tissue type: 22 DAP embryo - rep1	GSE12508	Transcription patterns during wheat development
4.8	97.2	GSM314287	tissue type: 22 DAP endosperm - rep1	GSE12508	Transcription patterns during wheat development
4.6	97.0	GSM314285	tissue type: 22 DAP embryo - rep2	GSE12508	Transcription patterns during wheat development
4.2	96.6	GSM314275	tissue type: pistil, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
4.1	96.4	GSM314277	tissue type: pistil, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
4.0	96.3	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.8	96.0	GSM314286	tissue type: 22 DAP embryo - rep3	GSE12508	Transcription patterns during wheat development
3.6	95.6	GSM314276	tissue type: pistil, before anthesis - rep2	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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