Co-expression analysis

Gene ID	TaAffx.78909.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g38300: DNA binding / transcription factor (HF=4e-10)
Module size	21 genes
NF	0.38
%ile	61.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.89	TaAffx.78909.1.S1_at	BJ288732	-	-	4e-10	At2g38300	DNA binding / transcription factor	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.91	Ta.14802.1.S1_at	CA682260	-	-	4e+0	At4g10767	SCRL21 (SCR-Like 21)	O.I.	H.G.	S.X.	Please select
0.51	73.0	0.95	Ta.17722.1.S1_at	CA623852	-	-	4e-2	At3g55960	NLI interacting factor (NIF) family protein	O.I.	H.G.	S.X.	Please select
0.48	69.0	0.95	TaAffx.81722.1.S1_at	CA682624	-	-	3e-1	At2g19130	S-locus lectin protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.48	69.0	0.95	TaAffx.129414.3.S1_x_at	CA667040	-	-	3e-1	At5g02070	protein kinase-related	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.93	TaAffx.129414.2.S1_x_at	CA670504	-	-	4e+0	At3g07590	small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.94	Ta.776.1.A1_at	BG907471	-	-	3e+0	At5g40040	60S acidic ribosomal protein P2 (RPP2E)	O.I.	H.G.	S.X.	Please select
0.41	59.6	0.95	TaAffx.20635.1.S1_at	CD895869	-	-	5e+0	At1g26355	SP1L1 (SPIRAL1-LIKE1)	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.93	TaAffx.109477.1.S1_x_at	CA674221	-	-	2e-1	At5g67640	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.92	TaAffx.55952.1.S1_at	CA659077	-	-	2e+0	At4g04870	CLS (CARDIOLIPIN SYNTHASE)	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.92	TaAffx.19109.1.A1_at	CK216126	-	-	9e+0	At4g12970	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.92	TaAffx.81495.2.S1_at	BJ260839	-	-	4e+0	At1g69510	-	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.96	Ta.22638.1.A1_at	AY327452.1	Receptor-like kinase protein	-	3e-1	At5g39030	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.95	TaAffx.104820.1.S1_at	CA744357	-	-	5e+0	At3g07590	small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.93	TaAffx.81495.2.S1_s_at	BJ260839	-	-	4e+0	At1g69510	-	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.95	Ta.1454.3.S1_x_at	CA737124	-	-	2e-1	At1g35830	VQ motif-containing protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.93	TaAffx.109477.1.S1_at	CA674221	-	-	2e-1	At5g67640	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.95	Ta.1454.3.S1_at	CA737124	-	-	2e-1	At1g35830	VQ motif-containing protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.93	TaAffx.5840.1.S1_at	CA697530	-	-	1e+0	At1g20360	F-box protein-related	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.93	Ta.14771.2.S1_at	CA639689	-	-	4e-1	At1g68090	ANN5	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.94	TaAffx.85861.1.S1_at	CA618948	-	-	2e-5	At4g31100	wall-associated kinase, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.1	99.3	GSM324488	Si- B+ rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
9.4	99.1	GSM324487	Si- B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
7.7	98.7	GSM298091	Leaf tissue of Solstice at 9 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
7.0	98.5	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.5	98.3	GSM314279	tissue type: anthers, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
5.2	97.5	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.0	97.4	GSM314280	tissue type: anthers, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
5.0	97.4	GSM250908	Tc_7dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.6	97.0	GSM314278	tissue type: anthers, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
4.6	97.0	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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