Co-expression analysis

Gene ID TaAffx.78850.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g07590: small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative (HF=4e+0)
Module size 16 genes
NF 0.41
%ile 65.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7389.10.79TaAffx.78850.1.S1_atCA725945--4e+0At3g07590small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putativeO.I.H.G.S.X.
0.5072.40.84TaAffx.16875.1.S1_atCK216018--6e-1At5g23950C2 domain-containing proteinO.I.H.G.S.X.
0.4969.70.86Ta.26108.1.A1_s_atCK214709--7e-3At3g49570LSU3 (RESPONSE TO LOW SULFUR 3)O.I.H.G.S.X.
0.4464.50.90Ta.4331.1.S1_atBQ168628--8e-7At2g37770aldo/keto reductase family proteinO.I.H.G.S.X.
0.4464.50.91TaAffx.111174.1.S1_atCA646654--1e+0At1g11570nuclear transport factor 2 (NTF2), putativeO.I.H.G.S.X.
0.4464.50.84TaAffx.109863.1.S1_s_atCA667881--7e-2At4g13040AP2 domain-containing transcription factor family proteinO.I.H.G.S.X.
0.4260.90.91TaAffx.99282.1.A1_atCK208158--5e+0At3g15250unknown proteinO.I.H.G.S.X.
0.4058.40.89TaAffx.10419.1.S1_atBJ217507--7e-1At1g52510hydrolase, alpha/beta fold family proteinO.I.H.G.S.X.
0.3956.10.85Ta.3442.2.S1_atBJ207304--4e+0At5g63590FLS3 (FLAVONOL SYNTHASE 3)O.I.H.G.S.X.
0.3956.10.89Ta.9605.1.A1_atBJ230145--4e-1At2g30260U2B'' (U2 small nuclear ribonucleoprotein B)O.I.H.G.S.X.
0.3854.70.88TaAffx.131520.1.S1_s_atBQ801772--6e-1At4g16500cysteine protease inhibitor family protein / cystatin family proteinO.I.H.G.S.X.
0.3651.90.84Ta.6001.2.S1_atCA622286--9e-3At3g05070-O.I.H.G.S.X.
0.3448.10.84Ta.18729.1.S1_s_atCA609356--5e-1At5g55750hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.3142.70.82Ta.9841.1.A1_atBJ238595--5e+0At2g18660EXLB3 (EXPANSIN-LIKE B3 PRECURSOR)O.I.H.G.S.X.
0.2939.20.88Ta.18997.1.S1_atCA645434--1e-2At1g47670amino acid transporter family proteinO.I.H.G.S.X.
0.2532.10.89Ta.22389.1.S1_atCA742022--2e-1At1g78480prenyltransferase/squalene oxidase repeat-containing proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
21.499.7GSM315203target strand labeled: Antisense - rep1GSE12528Wheat "Chinese Spring" natural antisense transcription surveyLink to GEO
4.897.2GSM139923Anther telophaseI-telophaseII rep2GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
4.897.2GSM314256tissue type: germinating seed, root - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
4.797.1GSM314289tissue type: 22 DAP endosperm - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
3.695.6GSM314287tissue type: 22 DAP endosperm - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
3.495.2GSM314288tissue type: 22 DAP endosperm - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
3.294.8GSM139924Anther telophaseI-telophaseII rep3GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
3.194.5GSM139922Anther telophaseI-telophaseII rep1GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
2.793.3GSM250897TcLr1_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
2.793.3GSM139925Anther tetrads rep1GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage