Co-expression analysis

Gene ID	TaAffx.78768.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g48205: zinc ion binding (HF=4e+0)
Module size	6 genes
NF	0.11
%ile	23.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.36	51.9	0.85	TaAffx.78768.1.S1_at	CA727586	-	-	4e+0	At5g48205	zinc ion binding	O.I.	H.G.	S.X.	Please select
0.48	69.0	0.85	TaAffx.51190.1.S1_at	BJ259821	-	-	1e+0	At1g05615	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	60.9	0.83	TaAffx.94313.1.S1_at	BG263155	-	-	8e+0	At5g16840	BPA1 (BINDINGPARTNEROFACD11 1)	O.I.	H.G.	S.X.	Please select
0.13	14.6	0.85	TaAffx.114389.1.S1_at	CA597955	-	-	7e+0	At3g50360	ATCEN2 (CENTRIN2)	O.I.	H.G.	S.X.	Please select
0.05	6.7	0.86	TaAffx.119541.1.S1_at	BJ268864	-	-	1e+0	At4g06536	-	O.I.	H.G.	S.X.	Please select
0.04	5.8	0.85	Ta.3736.1.A1_x_at	CD454622	-	-	3e-1	At5g49940	NFU2 (NIFU-LIKE PROTEIN 2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.7	98.4	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
5.0	97.4	GSM314277	tissue type: pistil, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
4.8	97.2	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.5	96.9	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.5	96.9	GSM314275	tissue type: pistil, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
4.4	96.8	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.4	96.8	GSM314276	tissue type: pistil, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
4.1	96.4	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.5	95.4	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.5	95.4	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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