Co-expression analysis

Gene ID TaAffx.78768.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g48205: zinc ion binding (HF=4e+0)
Module size 6 genes
NF 0.11
%ile 23.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.3651.90.85TaAffx.78768.1.S1_atCA727586--4e+0At5g48205zinc ion bindingO.I.H.G.S.X.
0.4869.00.85TaAffx.51190.1.S1_atBJ259821--1e+0At1g05615unknown proteinO.I.H.G.S.X.
0.4260.90.83TaAffx.94313.1.S1_atBG263155--8e+0At5g16840BPA1 (BINDINGPARTNEROFACD11 1)O.I.H.G.S.X.
0.1314.60.85TaAffx.114389.1.S1_atCA597955--7e+0At3g50360ATCEN2 (CENTRIN2)O.I.H.G.S.X.
0.056.70.86TaAffx.119541.1.S1_atBJ268864--1e+0At4g06536-O.I.H.G.S.X.
0.045.80.85Ta.3736.1.A1_x_atCD454622--3e-1At5g49940NFU2 (NIFU-LIKE PROTEIN 2)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.798.4GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
5.097.4GSM314277tissue type: pistil, before anthesis - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
4.897.2GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.596.9GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.596.9GSM314275tissue type: pistil, before anthesis - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
4.496.8GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.496.8GSM314276tissue type: pistil, before anthesis - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
4.196.4GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.595.4GSM250896Tc_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.595.4GSM250897TcLr1_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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