Co-expression analysis

Gene ID	TaAffx.78596.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g44520: ribose 5-phosphate isomerase-related (HF=1e+0)
Module size	15 genes
NF	0.33
%ile	52.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.76	90.1	0.97	TaAffx.78596.1.S1_at	CA730340	-	-	1e+0	At5g44520	ribose 5-phosphate isomerase-related	O.I.	H.G.	S.X.	Please select
0.42	60.9	0.97	Ta.5122.1.S1_at	CD929100	-	-	2e-2	At5g19400	SMG7	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.97	Ta.12438.1.A1_at	BQ172337	-	-	1e+0	At2g03822	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.97	Ta.25493.1.A1_at	CD452993	-	-	4e-5	At5g19420	Ran GTPase binding / chromatin binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.97	Ta.12121.1.S1_at	CD887416	-	-	1e-5	At2g40930	UBP5 (UBIQUITIN-SPECIFIC PROTEASE 5)	O.I.	H.G.	S.X.	Please select
0.34	48.1	0.97	Ta.1021.1.S1_at	BJ321957	-	-	2e-3	At5g48680	sterile alpha motif (SAM) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.98	Ta.30680.1.S1_a_at	BQ805327	-	-	3e-23	At5g55310	TOP1BETA (DNA TOPOISOMERASE 1 BETA)	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.98	Ta.755.1.A1_at	BJ306272	-	-	6e-2	At1g60200	splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.98	Ta.3313.1.S1_at	BJ217450	-	-	6e-1	At5g23090	NF-YB13 (NUCLEAR FACTOR Y, SUBUNIT B13)	O.I.	H.G.	S.X.	Please select
0.28	39.2	0.97	TaAffx.31311.1.S1_at	CD875309	-	-	6e-1	At4g18070	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.98	Ta.23254.1.S1_at	CA713841	-	-	7e-4	At2g45480	AtGRF9 (GROWTH-REGULATING FACTOR 9)	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.97	Ta.11680.1.S1_at	BQ170583	-	-	5e-1	At3g50880	HhH-GPD base excision DNA repair family protein	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.97	Ta.19876.1.S1_at	BQ236614	-	-	2e-3	At5g05570	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.97	Ta.10323.1.S1_at	BJ315407	-	-	3e+0	At3g30370	-	O.I.	H.G.	S.X.	Please select
0.20	24.0	0.97	Ta.296.2.A1_at	BJ228344	-	-	4e+0	At5g39530	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.2	99.5	GSM314278	tissue type: anthers, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
13.4	99.5	GSM314280	tissue type: anthers, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
12.2	99.4	GSM314279	tissue type: anthers, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
11.8	99.3	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
4.3	96.7	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.2	96.6	GSM139928	Anther immature pollen rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.2	96.6	GSM139931	Anther maturea nthers rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.1	96.4	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.1	96.4	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.8	96.0	GSM314287	tissue type: 22 DAP endosperm - rep1	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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