Co-expression analysis

Gene ID	TaAffx.78545.2.S1_at
Gene name	WRKY39 transcription factor
Homology with Arabidopsis	Similar to At4g33780: - (HF=4e-3)
Module size	27 genes
NF	0.44
%ile	68.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.96	99.3	0.92	TaAffx.78545.2.S1_at	CA627335	WRKY39 transcription factor	-	4e-3	At4g33780	-	O.I.	H.G.	S.X.	Please select
0.65	83.9	0.94	TaAffx.25126.1.S1_at	CA705922	-	-	3e+0	At3g17460	PHD finger family protein	O.I.	H.G.	S.X.	Please select
0.56	78.6	0.93	TaAffx.57968.1.S1_at	CA623483	-	-	4e-3	At2g42910	ribose-phosphate pyrophosphokinase 4 / phosphoribosyl diphosphate synthetase 4 (PRS4)	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.94	TaAffx.49612.2.A1_at	CA498714	-	-	5e-1	At1g06980	unknown protein	O.I.	H.G.	S.X.	Please select
0.51	73.0	0.94	TaAffx.34241.2.S1_x_at	CA722326	-	-	4e+0	At5g51960	-	O.I.	H.G.	S.X.	Please select
0.51	73.0	0.94	TaAffx.34241.2.S1_at	CA722326	-	-	4e+0	At5g51960	-	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.94	Ta.14146.3.S1_x_at	CA697368	-	-	2e+1	At5g24313	unknown protein	O.I.	H.G.	S.X.	Please select
0.49	69.7	0.95	TaAffx.58638.1.S1_at	CA617698	-	-	4e+0	At1g12805	nucleotide binding	O.I.	H.G.	S.X.	Please select
0.49	69.7	0.94	TaAffx.56155.1.S1_at	CA656564	-	-	1e+1	At5g26070	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.94	TaAffx.38268.1.A1_at	BJ242361	-	-	1e+0	At1g21326	VQ motif-containing protein	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.94	TaAffx.25411.1.S1_at	CA700489	-	-	4e+0	At4g35320	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.96	TaAffx.30673.1.S1_at	CA623010	-	-	7e-11	At4g25630	FIB2 (FIBRILLARIN 2)	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.94	TaAffx.30598.1.S1_at	CA623743	-	-	1e+0	At3g05230	signal peptidase subunit family protein	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.94	Ta.3478.3.S1_x_at	CA637826	-	-	2e-11	At1g69670	CUL3B (CULLIN 3B)	O.I.	H.G.	S.X.	Please select
0.42	60.9	0.94	TaAffx.57555.1.S1_at	CA618738	-	-	2e+1	At5g67600	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	59.6	0.95	TaAffx.8469.1.S1_at	CA624919	-	-	1e+1	At4g13140	-	O.I.	H.G.	S.X.	Please select
0.41	59.6	0.94	TaAffx.31791.1.S1_at	CA607567	-	-	7e-1	At5g26717	-	O.I.	H.G.	S.X.	Please select
0.41	59.6	0.95	TaAffx.29732.1.S1_at	CA636473	-	-	7e-1	At4g14550	IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14)	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.96	TaAffx.112158.1.S1_at	CA626538	-	-	2e+1	At3g28590	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.94	TaAffx.58533.1.S1_at	CA618813	-	-	1e+0	At5g47700	60S acidic ribosomal protein P1 (RPP1C)	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.95	Ta.3203.2.S1_x_at	CA621738	-	-	5e-6	At1g27530	-	O.I.	H.G.	S.X.	Please select
0.37	53.0	0.94	TaAffx.113052.1.S1_at	CA618510	-	-	4e+0	At3g56980	BHLH039	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.94	TaAffx.50210.1.S1_at	CA744417	-	-	7e-2	At1g60880	AGL56	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.94	Ta.1965.1.S1_at	CA634037	-	-	6e-3	At4g23330	eukaryotic translation initiation factor-related	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.95	TaAffx.78861.1.S1_at	CA725589	-	-	1e+1	At3g28070	nodulin MtN21 family protein	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.95	Ta.3911.2.S1_s_at	CA604151	-	-	4e+0	At2g44290	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (YLS3)	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.94	TaAffx.5596.1.S1_at	CA705635	-	-	3e+0	At1g12250	thylakoid lumenal protein-related	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.5	98.6	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.8	98.4	GSM314267	tissue type: seedling, leaf - rep2	GSE12508	Transcription patterns during wheat development
6.7	98.4	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
5.9	98.0	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.8	97.9	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.0	97.4	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
5.0	97.4	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.6	97.0	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.5	96.9	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
4.3	96.7	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage