Co-expression analysis

Gene ID	TaAffx.77699.1.S1_at
Gene name
Homology with Arabidopsis	Similar to Atmg01310: - (HF=1e+1)
Module size	6 genes
NF	0.02
%ile	5.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.77	TaAffx.77699.1.S1_at	CA743957	-	-	1e+1	Atmg01310	-	O.I.	H.G.	S.X.	Please select
0.10	11.3	0.91	TaAffx.13285.1.S1_at	BG910034	-	-	3e+0	At5g62210	embryo-specific protein-related	O.I.	H.G.	S.X.	Please select
0.06	7.6	0.93	Ta.19063.1.S1_at	CA646746	-	-	4e+0	At5g23290	PDF5 (PREFOLDIN 5)	O.I.	H.G.	S.X.	Please select
0.04	5.8	0.90	TaAffx.85981.2.S1_at	CA625845	-	-	1e-56	At1g75630	AVA-P4	O.I.	H.G.	S.X.	Please select
0.01	2.4	0.92	TaAffx.58227.1.S1_at	CA621342	-	-	1e+0	At5g52160	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.01	2.4	0.91	Ta.6893.1.A1_at	BQ807133	-	-	4e-1	At4g31800	WRKY18	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.9	99.5	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
12.4	99.4	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
10.4	99.2	GSM343686	Wheat var. Kennedy_Fp inoculated_rep1	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
9.9	99.1	GSM343685	Wheat var. Kennedy_control_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
8.3	98.8	GSM343687	Wheat var. Kennedy_Fp inoculated_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
7.0	98.5	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.8	98.4	GSM343682	Wheat var. Kennedy_control_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
6.2	98.1	GSM343678	Wheat var. Kennedy_control_rep1	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
4.9	97.3	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.9	97.3	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the maize gene, Zm.5578.4.S1_at, orthologous to the query gene, TaAffx.77699.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	94.0	Zm.5578.4.S1_at	Atmg01310	Hypothetical protein LOC100193656	-	4e+0	At1g34910	unknown protein	O.I.	H.G.	S.X.	Please select
0.75	90.8	Zm.15979.1.A1_at	Atmg01310	hypothetical protein LOC100277589	-	8e-2	At3g10750	-	O.I.	H.G.	S.X.	Please select
0.59	76.1	Zm.12454.1.A1_at	Atmg01310	hypothetical protein LOC100273736	-	6e-3	At1g10640	polygalacturonase	O.I.	H.G.	S.X.	Please select
0.55	71.6	Zm.18971.1.A1_at	Atmg01310	-	-	3e-8	At2g25870	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.53	69.1	ZmAffx.1075.1.A1_at	Atmg01310	-	-	1e+1	At5g10130	pollen Ole e 1 allergen and extensin family protein	O.I.	H.G.	S.X.	Please select
0.46	58.4	Zm.18245.1.S1_at	Atmg01310	-	-	2e+0	At5g18130	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	58.4	ZmAffx.954.1.S1_at	Atmg01310	-	-	3e+0	At1g26480	GRF12 (GENERAL REGULATORY FACTOR 12)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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