Co-expression analysis

Gene ID	TaAffx.77639.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At4g23180: CRK10 (CYSTEINE-RICH RLK10) (HF=1e-3)
Module size	6 genes
NF	0.20
%ile	34.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.87	TaAffx.77639.1.S1_at	CA744867	-	-	1e-3	At4g23180	CRK10 (CYSTEINE-RICH RLK10)	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.96	Ta.21581.1.S1_at	CA696527	-	-	4e+0	At2g36460	fructose-bisphosphate aldolase, putative	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.95	Ta.26652.1.A1_at	CD491481	-	-	1e-3	At1g36050	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.95	TaAffx.24121.1.S1_at	CA724779	-	-	2e-1	At1g11590	pectin methylesterase, putative	O.I.	H.G.	S.X.	Please select
0.13	14.6	0.95	Ta.6762.3.S1_at	BJ246546	-	-	1e+0	At5g61490	-	O.I.	H.G.	S.X.	Please select
0.07	8.6	0.91	Ta.974.2.S1_at	CA747351	-	-	5e+0	At3g28956	catalytic/ nucleotide binding	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.6	98.7	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
7.0	98.5	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.5	97.8	GSM143507	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
5.3	97.6	GSM138163	genotype E5 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
5.0	97.4	GSM139914	Anther pre-meiosis rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.9	97.3	GSM250908	Tc_7dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.6	95.6	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.5	95.4	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.5	95.4	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.4	95.2	GSM139928	Anther immature pollen rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage