Co-expression analysis

Gene ID TaAffx.77613.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At4g16024: unknown protein (HF=3e+0)
Module size 41 genes
NF 0.42
%ile 67.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9599.10.92TaAffx.77613.1.S1_atCA745322--3e+0At4g16024unknown proteinO.I.H.G.S.X.
0.6483.60.93TaAffx.50531.1.S1_atCA739081--2e+0At4g30690translation initiation factor 3 (IF-3) family proteinO.I.H.G.S.X.
0.6282.30.94TaAffx.51853.1.S1_atCA717776--4e-6At3g16630KINESIN-13AO.I.H.G.S.X.
0.5979.80.92TaAffx.143995.9.A1_atAF434705--2e-1At3g28050nodulin MtN21 family proteinO.I.H.G.S.X.
0.5779.20.93TaAffx.123925.1.S1_atCA679093--2e+1At4g14430IBR10 (INDOLE-3-BUTYRIC ACID RESPONSE 10)O.I.H.G.S.X.
0.5779.20.95Ta.7572.2.A1_atCA638826--4e+0At5g03750-O.I.H.G.S.X.
0.5779.20.97Ta.5109.3.S1_atCA697843Plasma membrane H+-ATPase subunit H-9e-6At4g26710ATP synthase subunit H family proteinO.I.H.G.S.X.
0.5678.60.96TaAffx.32764.1.S1_atCA726224--6e-76At1g78920AVP2 (ARABIDOPSIS VACUOLAR H+-PYROPHOSPHATASE 2)O.I.H.G.S.X.
0.5678.60.96TaAffx.78277.1.S1_atCA734939--2e-7At5g48460fimbrin-like protein, putativeO.I.H.G.S.X.
0.5475.50.96Ta.11.2.A1_atCB307838Cathepsin B-7e-6At1g02305cathepsin B-like cysteine protease, putativeO.I.H.G.S.X.
0.5374.90.95Ta.17892.2.S1_atCA735124--4e+0At3g07800thymidine kinase, putativeO.I.H.G.S.X.
0.5273.70.96TaAffx.27832.1.S1_atCA669734--2e+1At5g55125unknown proteinO.I.H.G.S.X.
0.5173.00.94TaAffx.78843.1.S1_atCA726254--5e-1At2g23810TET8 (TETRASPANIN8)O.I.H.G.S.X.
0.5173.00.94Ta.1058.2.A1_atCK154533--3e-5At3g02470SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE)O.I.H.G.S.X.
0.5173.00.94TaAffx.6201.1.S1_atCA690067--6e-2At4g37180myb family transcription factorO.I.H.G.S.X.
0.5072.40.94TaAffx.23136.1.S1_atCA743059--2e+0At4g25672CPuORF12 (Conserved peptide upstream open reading frame 12)O.I.H.G.S.X.
0.5072.40.95Ta.6056.3.S1_atCA743460--5e-9At3g48390MA3 domain-containing proteinO.I.H.G.S.X.
0.4869.00.96Ta.23295.3.S1_atCA735643--3e+0At5g62720integral membrane HPP family proteinO.I.H.G.S.X.
0.4869.00.95Ta.6733.3.S1_atBJ304679--2e+1At5g05280zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.4869.00.96TaAffx.4746.1.S1_atCA733072--5e-1At5g10360EMB3010 (embryo defective 3010)O.I.H.G.S.X.
0.4869.00.96TaAffx.5378.1.S1_atCA712989--3e+0At4g37630CYCD5O.I.H.G.S.X.
0.4767.90.96TaAffx.128896.6.A1_atCA739307--8e-26Atcg00780-O.I.H.G.S.X.
0.4565.20.94TaAffx.3720.2.S1_atCA662374--1e-68Atcg00900-O.I.H.G.S.X.
0.4260.90.95TaAffx.105136.2.S1_atCA739285--9e-35Atcg00170-O.I.H.G.S.X.
0.4058.40.94TaAffx.83397.1.S1_atCA658049--9e+0At4g24805methyltransferaseO.I.H.G.S.X.
0.3753.00.97TaAffx.78289.1.S1_atCA734850--2e-17At1g07920elongation factor 1-alpha / EF-1-alphaO.I.H.G.S.X.
0.3753.00.95TaAffx.36253.2.A1_atCA706063--8e-4At4g31480coatomer beta subunit, putative / beta-coat protein, putative / beta-COP, putativeO.I.H.G.S.X.
0.3549.80.92TaAffx.78849.1.S1_atCA726053--1e+0At1g11925-O.I.H.G.S.X.
0.3549.80.93Ta.28603.1.A1_atAY290725.1--1e-25At4g3467040S ribosomal protein S3A (RPS3aB)O.I.H.G.S.X.
0.3448.10.95Ta.1655.3.S1_x_atCA666874--4e+0At1g27220paired amphipathic helix repeat-containing proteinO.I.H.G.S.X.
0.3448.10.92Ta.14567.2.S1_atCA735320RuBisCO large subunit-5e-30Atmg00280-O.I.H.G.S.X.
0.3448.10.92TaAffx.111580.1.S1_atCA637326--2e-4At1g10300GTP-binding protein-relatedO.I.H.G.S.X.
0.3448.10.93Ta.7812.2.A1_atBE517024--1e+1At5g10300MES5 (METHYL ESTERASE 5)O.I.H.G.S.X.
0.3448.10.94TaAffx.6823.1.S1_atCA676761--7e-2At4g13940MEE58 (MATERNAL EFFECT EMBRYO ARREST 58)O.I.H.G.S.X.
0.3346.90.92TaAffx.86810.1.S1_atCA600264--2e-1At3g43583unknown proteinO.I.H.G.S.X.
0.3346.90.95TaAffx.78678.1.S1_atCA729105--4e+0At1g66820glycine-rich proteinO.I.H.G.S.X.
0.3346.90.94Ta.27508.1.A1_atCA703452--7e-38At1g73590PIN1 (PIN-FORMED 1)O.I.H.G.S.X.
0.3346.90.92Ta.9718.2.S1_x_atCA737941--2e-31At1g29910CAB3 (CHLOROPHYLL A/B BINDING PROTEIN 3)O.I.H.G.S.X.
0.3346.90.94Ta.30727.1.A1_atCK211113--1e-39At5g01530chlorophyll A-B binding protein CP29 (LHCB4)O.I.H.G.S.X.
0.3346.90.93Ta.9718.2.S1_atCA737941--2e-31At1g29910CAB3 (CHLOROPHYLL A/B BINDING PROTEIN 3)O.I.H.G.S.X.
0.3346.90.95Ta.24123.3.S1_atCA734877--3e-1At1g12244DNA binding / hydrolase, acting on ester bonds / nuclease/ nucleic acid binding / recombinaseO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
29.299.8GSM315203target strand labeled: Antisense - rep1GSE12528Wheat "Chinese Spring" natural antisense transcription surveyLink to GEO
5.797.9GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
4.697.0GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.396.7GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.795.8GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
3.395.0GSM314261tissue type: seedling, root - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
3.094.3GSM250896Tc_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
2.994.0GSM298069Leaf tissue of Paragon at 9 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
2.592.5GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
2.592.5GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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