Co-expression analysis

Gene ID	TaAffx.77390.1.S1_at
Gene name	histone deacetylase
Homology with Arabidopsis	Similar to At5g63110: HDA6 (HISTONE DEACETYLASE 6) (HF=1e-19)
Module size	6 genes
NF	0.60
%ile	85.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.97	TaAffx.77390.1.S1_at	CD893386	histone deacetylase	-	1e-19	At5g63110	HDA6 (HISTONE DEACETYLASE 6)	O.I.	H.G.	S.X.	Please select
0.55	76.8	0.96	TaAffx.120650.1.S1_s_at	BG608388	-	-	2e+0	At2g40080	ELF4 (EARLY FLOWERING 4)	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.97	Ta.1178.2.S1_at	BG909050	-	-	1e-1	At2g07775	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.97	Ta.2207.2.S1_a_at	CA612248	-	-	5e-25	At5g05780	RPN8A (RP NON-ATPASE SUBUNIT 8A)	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.97	Ta.7274.3.S1_a_at	AJ612375	-	-	1e-3	At1g79650	RAD23	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.97	Ta.7506.2.S1_a_at	BJ267303	-	-	5e-15	At1g27650	ATU2AF35A	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.1	96.4	GSM139914	Anther pre-meiosis rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.6	95.6	GSM139918	Anther leptotene-pachytene rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.5	95.4	GSM139928	Anther immature pollen rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.5	95.4	GSM139917	Anther leptotene-pachytene rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.3	95.0	GSM314269	tissue type: immature inflorescence - rep1	GSE12508	Transcription patterns during wheat development
3.2	94.8	GSM139912	Anther pre-meiosis rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.1	94.5	GSM139923	Anther telophaseI-telophaseII rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.1	94.5	GSM139929	Anther immature pollen rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.1	94.5	GSM314270	tissue type: immature inflorescence - rep2	GSE12508	Transcription patterns during wheat development
3.1	94.5	GSM314271	tissue type: immature inflorescence - rep3	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

A co-expression module including the maize gene, Zm.419.1.S1_at, orthologous to the query gene, TaAffx.77390.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.89	96.8	Zm.419.1.S1_at	At5g63110	histone deacetylase	-	8e-26	At5g63110	HDA6 (HISTONE DEACETYLASE 6)	O.I.	H.G.	S.X.	Please select
0.56	74.4	Zm.710.1.A1_at	At5g63110	-	-	6e+0	At2g18210	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	Zm.6195.1.A1_at	At5g63110	hypothetical protein LOC100275106	-	4e+0	At4g17790	-	O.I.	H.G.	S.X.	Please select
0.30	29.8	Zm.7166.1.A1_at	At5g63110	cellulose synthase8	-	3e-36	At4g39350	CESA2 (CELLULOSE SYNTHASE A2)	O.I.	H.G.	S.X.	Please select
0.30	29.8	Zm.14057.2.S1_at	At5g63110	-	-	8e-20	At4g22910	FZR2 (FIZZY-RELATED 2)	O.I.	H.G.	S.X.	Please select
0.23	18.6	Zm.10670.1.A1_at	At5g63110	hypothetical protein LOC100280379	-	1e+0	At5g11410	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.21	15.5	Zm.5048.5.S1_a_at	At5g63110	protein disulfide isomerase	-	7e-29	At2g47470	UNE5 (UNFERTILIZED EMBRYO SAC 5)	O.I.	H.G.	S.X.	Please select
0.19	12.8	Zm.4238.1.A1_at	At5g63110	cleavage and polyadenylation specificity factor, 100 kDa subunit	-	8e-1	At2g14282	SCRL18 (SCR-Like 18)	O.I.	H.G.	S.X.	Please select
0.13	6.8	Zm.2119.1.A1_at	At5g63110	-	-	8e-5	At3g23890	TOPII (TOPOISOMERASE II)	O.I.	H.G.	S.X.	Please select
0.09	4.0	Zm.6569.5.A1_at	At5g63110	-	-	2e-1	At3g01570	glycine-rich protein / oleosin	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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