Co-expression analysis

Gene ID TaAffx.77390.1.S1_at
Gene name histone deacetylase
Homology with ArabidopsisSimilar to At5g63110: HDA6 (HISTONE DEACETYLASE 6) (HF=1e-19)
Module size 6 genes
NF 0.60
%ile 85.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.97TaAffx.77390.1.S1_atCD893386histone deacetylase-1e-19At5g63110HDA6 (HISTONE DEACETYLASE 6)O.I.H.G.S.X.
0.5576.80.96TaAffx.120650.1.S1_s_atBG608388--2e+0At2g40080ELF4 (EARLY FLOWERING 4)O.I.H.G.S.X.
0.5072.40.97Ta.1178.2.S1_atBG909050--1e-1At2g07775unknown proteinO.I.H.G.S.X.
0.5072.40.97Ta.2207.2.S1_a_atCA612248--5e-25At5g05780RPN8A (RP NON-ATPASE SUBUNIT 8A)O.I.H.G.S.X.
0.4464.50.97Ta.7274.3.S1_a_atAJ612375--1e-3At1g79650RAD23O.I.H.G.S.X.
0.3346.90.97Ta.7506.2.S1_a_atBJ267303--5e-15At1g27650ATU2AF35AO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.196.4GSM139914Anther pre-meiosis rep2GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
3.695.6GSM139918Anther leptotene-pachytene rep3GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
3.595.4GSM139928Anther immature pollen rep1GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
3.595.4GSM139917Anther leptotene-pachytene rep2GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
3.395.0GSM314269tissue type: immature inflorescence - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
3.294.8GSM139912Anther pre-meiosis rep1GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
3.194.5GSM139923Anther telophaseI-telophaseII rep2GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
3.194.5GSM139929Anther immature pollen rep2GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
3.194.5GSM314270tissue type: immature inflorescence - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
3.194.5GSM314271tissue type: immature inflorescence - rep3GSE12508Transcription patterns during wheat developmentLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1620045_at, orthologous to the query gene, TaAffx.77390.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6787.91620045_atAt5g63110similar to HDA6 (HISTONE DEACETYLASE 6); histone deacetylase-4e-38At5g63110HDA6 (HISTONE DEACETYLASE 6)O.I.H.G.S.X.
0.8093.61617420_x_atAt5g63110--2e-20At4g1810060S ribosomal protein L32 (RPL32A)O.I.H.G.S.X.
0.4464.11610018_atAt5g63110hypothetical protein LOC100246937-4e-10At1g43640AtTLP5 (TUBBY LIKE PROTEIN 5)O.I.H.G.S.X.
0.3345.71616920_atAt5g63110hypothetical protein LOC100251933-2e-12At5g05610AL1 (ALFIN-LIKE 1)O.I.H.G.S.X.
0.3141.31611002_s_atAt5g63110hypothetical protein LOC100246998-6e-13At3g10210-O.I.H.G.S.X.
0.2734.01616366_atAt5g63110hypothetical protein LOC100251921-3e-21At3g53500zinc knuckle (CCHC-type) family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Zea_mays



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