CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID TaAffx.77390.1.S1_at

Gene name histone deacetylase
Homology with Arabidopsis Similar to At5g63110: HDA6 (HISTONE DEACETYLASE 6) (HF=1e-19)

Module size 6 genes

NF 0.60

%ile 85.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.2 0.97 TaAffx.77390.1.S1_at CD893386 histone deacetylase - 1e-19 At5g63110 HDA6 (HISTONE DEACETYLASE 6) O.I. H.G. S.X.
0.55 76.8 0.96 TaAffx.120650.1.S1_s_at BG608388 - - 2e+0 At2g40080 ELF4 (EARLY FLOWERING 4) O.I. H.G. S.X.
0.50 72.4 0.97 Ta.1178.2.S1_at BG909050 - - 1e-1 At2g07775 unknown protein O.I. H.G. S.X.
0.50 72.4 0.97 Ta.2207.2.S1_a_at CA612248 - - 5e-25 At5g05780 RPN8A (RP NON-ATPASE SUBUNIT 8A) O.I. H.G. S.X.
0.44 64.5 0.97 Ta.7274.3.S1_a_at AJ612375 - - 1e-3 At1g79650 RAD23 O.I. H.G. S.X.
0.33 46.9 0.97 Ta.7506.2.S1_a_at BJ267303 - - 5e-15 At1g27650 ATU2AF35A O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.1 96.4 GSM139914 Anther pre-meiosis rep2 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.6 95.6 GSM139918 Anther leptotene-pachytene rep3 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.5 95.4 GSM139928 Anther immature pollen rep1 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.5 95.4 GSM139917 Anther leptotene-pachytene rep2 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.3 95.0 GSM314269 tissue type: immature inflorescence - rep1 GSE12508 Transcription patterns during wheat development
3.2 94.8 GSM139912 Anther pre-meiosis rep1 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.1 94.5 GSM139923 Anther telophaseI-telophaseII rep2 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.1 94.5 GSM139929 Anther immature pollen rep2 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.1 94.5 GSM314270 tissue type: immature inflorescence - rep2 GSE12508 Transcription patterns during wheat development
3.1 94.5 GSM314271 tissue type: immature inflorescence - rep3 GSE12508 Transcription patterns during wheat development

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.6033.1.S1_at, orthologous to the query gene, TaAffx.77390.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.56 83.9 PtpAffx.6033.1.S1_at At5g63110 histone deacetylase - 2e-91 At4g38130 HD1 (HISTONE DEACETYLASE 1) O.I. H.G. S.X.
0.50 78.6 PtpAffx.205895.1.S1_at At5g63110 hypothetical protein - 1e-9 At1g20830 unknown protein O.I. H.G. S.X.
0.31 53.7 PtpAffx.11632.2.S1_at At5g63110 - - 5e+0 At3g47070 unknown protein O.I. H.G. S.X.
0.29 50.5 PtpAffx.222271.1.S1_at At5g63110 hypothetical protein - 2e-108 At4g22720 glycoprotease M22 family protein O.I. H.G. S.X.
0.26 45.2 PtpAffx.24171.2.A1_at At5g63110 - - 2e-24 At3g06180 structural constituent of ribosome O.I. H.G. S.X.
0.25 43.6 PtpAffx.125801.1.A1_s_at At5g63110 hypothetical protein - 6e-6 At1g16180 TMS membrane family protein / tumour differentially expressed (TDE) family protein O.I. H.G. S.X.
0.23 40.5 PtpAffx.151377.1.S1_at At5g63110 hypothetical protein - 5e-2 At3g21175 ZML1 (ZIM-LIKE 1) O.I. H.G. S.X.
0.20 34.6 PtpAffx.208380.1.S1_at At5g63110 hypothetical protein - 3e-46 At5g48960 5' nucleotidase family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Vitis_vinifera
Zea_mays

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