Co-expression analysis

Gene ID TaAffx.77390.1.S1_at
Gene name histone deacetylase
Homology with ArabidopsisSimilar to At5g63110: HDA6 (HISTONE DEACETYLASE 6) (HF=1e-19)
Module size 6 genes
NF 0.60
%ile 85.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.97TaAffx.77390.1.S1_atCD893386histone deacetylase-1e-19At5g63110HDA6 (HISTONE DEACETYLASE 6)O.I.H.G.S.X.
0.5576.80.96TaAffx.120650.1.S1_s_atBG608388--2e+0At2g40080ELF4 (EARLY FLOWERING 4)O.I.H.G.S.X.
0.5072.40.97Ta.1178.2.S1_atBG909050--1e-1At2g07775unknown proteinO.I.H.G.S.X.
0.5072.40.97Ta.2207.2.S1_a_atCA612248--5e-25At5g05780RPN8A (RP NON-ATPASE SUBUNIT 8A)O.I.H.G.S.X.
0.4464.50.97Ta.7274.3.S1_a_atAJ612375--1e-3At1g79650RAD23O.I.H.G.S.X.
0.3346.90.97Ta.7506.2.S1_a_atBJ267303--5e-15At1g27650ATU2AF35AO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.196.4GSM139914Anther pre-meiosis rep2GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
3.695.6GSM139918Anther leptotene-pachytene rep3GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
3.595.4GSM139928Anther immature pollen rep1GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
3.595.4GSM139917Anther leptotene-pachytene rep2GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
3.395.0GSM314269tissue type: immature inflorescence - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
3.294.8GSM139912Anther pre-meiosis rep1GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
3.194.5GSM139923Anther telophaseI-telophaseII rep2GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
3.194.5GSM139929Anther immature pollen rep2GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
3.194.5GSM314270tissue type: immature inflorescence - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
3.194.5GSM314271tissue type: immature inflorescence - rep3GSE12508Transcription patterns during wheat developmentLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os08g0344100, orthologous to the query gene, TaAffx.77390.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5978.0Os08g0344100At5g63110-Histone deacetylase2e-14At5g63110HDA6 (HISTONE DEACETYLASE 6)O.I.H.G.S.X.
0.8395.8Os04g0117600At5g63110-Dihydrouridine synthase, DuS family protein1e-19At4g38890dihydrouridine synthase family proteinO.I.H.G.S.X.
0.7793.1Os05g0181000At5g63110-Heat shock protein Hsp70 family protein7e-12At1g79930HSP91O.I.H.G.S.X.
0.4458.1Os09g0372400At5g63110-Hypothetical protein2e-1At1g20240-O.I.H.G.S.X.
0.3032.7Os02g0606100At5g63110-Quinoprotein amine dehydrogenase, beta chain-likedomain containing protein6e-7At1g73180eukaryotic translation initiation factor-relatedO.I.H.G.S.X.
0.2931.1Os05g0566900At5g63110-TA9 protein (Fragment)4e-5At1g29370kinase-relatedO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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