Co-expression analysis

Gene ID TaAffx.77390.1.S1_at
Gene name histone deacetylase
Homology with ArabidopsisSimilar to At5g63110: HDA6 (HISTONE DEACETYLASE 6) (HF=1e-19)
Module size 6 genes
NF 0.60
%ile 85.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.97TaAffx.77390.1.S1_atCD893386histone deacetylase-1e-19At5g63110HDA6 (HISTONE DEACETYLASE 6)O.I.H.G.S.X.
0.5576.80.96TaAffx.120650.1.S1_s_atBG608388--2e+0At2g40080ELF4 (EARLY FLOWERING 4)O.I.H.G.S.X.
0.5072.40.97Ta.1178.2.S1_atBG909050--1e-1At2g07775unknown proteinO.I.H.G.S.X.
0.5072.40.97Ta.2207.2.S1_a_atCA612248--5e-25At5g05780RPN8A (RP NON-ATPASE SUBUNIT 8A)O.I.H.G.S.X.
0.4464.50.97Ta.7274.3.S1_a_atAJ612375--1e-3At1g79650RAD23O.I.H.G.S.X.
0.3346.90.97Ta.7506.2.S1_a_atBJ267303--5e-15At1g27650ATU2AF35AO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.196.4GSM139914Anther pre-meiosis rep2GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
3.695.6GSM139918Anther leptotene-pachytene rep3GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
3.595.4GSM139928Anther immature pollen rep1GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
3.595.4GSM139917Anther leptotene-pachytene rep2GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
3.395.0GSM314269tissue type: immature inflorescence - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
3.294.8GSM139912Anther pre-meiosis rep1GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
3.194.5GSM139923Anther telophaseI-telophaseII rep2GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
3.194.5GSM139929Anther immature pollen rep2GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
3.194.5GSM314270tissue type: immature inflorescence - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
3.194.5GSM314271tissue type: immature inflorescence - rep3GSE12508Transcription patterns during wheat developmentLink to GEO

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.58612.1.S1_at, orthologous to the query gene, TaAffx.77390.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7087.1GmaAffx.58612.1.S1_atAt5g63110--6e-19At5g63110HDA6 (HISTONE DEACETYLASE 6)O.I.H.G.S.X.
0.6786.1GmaAffx.90621.1.S1_s_atAt5g63110--4e-50At2g21270ubiquitin fusion degradation UFD1 family proteinO.I.H.G.S.X.
0.5878.8GmaAffx.86611.1.S1_atAt5g63110--2e-34At5g02800protein kinase family proteinO.I.H.G.S.X.
0.5878.8GmaAffx.88360.1.S1_atAt5g63110--1e-7At1g71980protease-associated zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.5678.2GmaAffx.44003.2.S1_atAt5g63110--1e-13At5g18830SPL7 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 7)O.I.H.G.S.X.
0.5273.1GmaAffx.29121.1.S1_atAt5g63110--1e+0At4g17310unknown proteinO.I.H.G.S.X.
0.5172.3GmaAffx.90994.1.S1_s_atAt5g63110--7e-12At4g11410short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.5071.7GmaAffx.76206.1.S1_atAt5g63110--5e-59At1g71820SEC6O.I.H.G.S.X.
0.5071.7Gma.16282.4.S1_a_atAt5g63110--1e-20At1g43190polypyrimidine tract-binding protein, putative / heterogeneous nuclear ribonucleoprotein, putativeO.I.H.G.S.X.
0.5071.7GmaAffx.18114.2.S1_atAt5g63110--3e-10At3g05090transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.
0.5071.7GmaAffx.91113.1.S1_s_atAt5g63110--1e-31At4g23460beta-adaptin, putativeO.I.H.G.S.X.
0.4766.6Gma.7528.2.S1_atAt5g63110--3e-49At4g16143IMPA-2 (IMPORTIN ALPHA ISOFORM 2)O.I.H.G.S.X.
0.4766.6Gma.6579.2.S1_atAt5g63110--2e-8At5g28220bindingO.I.H.G.S.X.
0.4665.5GmaAffx.87598.1.S1_atAt5g63110--8e-1At2g13125unknown proteinO.I.H.G.S.X.
0.4463.3GmaAffx.92886.1.S1_s_atAt5g63110--3e-41At5g09900EMB2107 (EMBRYO DEFECTIVE 2107)O.I.H.G.S.X.
0.4259.3GmaAffx.55210.1.S1_atAt5g63110--5e-1At1g08650PPCK1 (PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE)O.I.H.G.S.X.
0.3954.5GmaAffx.43069.1.S1_atAt5g63110--4e-7At1g14570UBX domain-containing proteinO.I.H.G.S.X.
0.3751.7GmaAffx.92182.1.S1_s_atAt5g63110--9e-1At1g69800CBS domain-containing proteinO.I.H.G.S.X.
0.3650.8GmaAffx.68394.1.S1_atAt5g63110--3e+0At5g03660unknown proteinO.I.H.G.S.X.
0.3040.4Gma.6104.2.S1_a_atAt5g63110--3e-20At5g63260zinc finger (CCCH-type) family proteinO.I.H.G.S.X.
0.2430.9GmaAffx.89525.1.S1_s_atAt5g63110--3e-26At2g39840TOPP4O.I.H.G.S.X.
0.2329.9GmaAffx.90987.1.S1_atAt5g63110--1e+0At5g64750ABR1 (ABA REPRESSOR1)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage